Bioconductor Dropseq

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dropseq dropletutils droplet

updated 6.8 years ago by Aaron Lun ★ 29k • written 6.8 years ago by Bogdan ▴ 670

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MAST mast dropseq

updated 7.8 years ago by Andrew_McDavid ▴ 280 • written 7.8 years ago by jeremycfd ▴ 10

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Dropseq single-cell normalization sparse

updated 9.2 years ago by Aaron Lun ★ 29k • written 9.2 years ago by ssabri ▴ 20

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Answer: "Watched Tags" are being erased rather than updated by shepherl 4.2k

This should now be resolved

Answer: Question about collapsing ASVs by genus level during DESeq2 analysis by Michael Love 43k

I'll just note that microbiome stats folks tend to use other tools than DESeq2. > several ASVs belong to the same genus but are not iden…

Answer: Integration: Paired-end vs healthy single-end from a different source by James W. MacDonald 68k

If by reprocess you mean generate libraries and re-sequence, then that's something you could do. Otherwise the biological and technical dif…

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

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Bioconductor 3.22 Released!

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

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