Showing : MAST • reset
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Issues geting meaninfull results for single cell DGE using MAST
MAST SingleCell
1 day ago zroger499 • 0
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99
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When I run `zlm` with several clusters, how to compare 1 cluster versus all the others?
MAST
5 months ago Dan • 0
0
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1
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188
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Differentially expressed genes across three different conditions
MAST SingleCell diffGeneAnalysis
updated 6 months ago by 58k • written 6 months ago by • 0
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1
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227
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MAST zlm shows warning: Coefficients ... are never estimible and will be dropped.
MAST
updated 7 months ago by • 0 • written 11 months ago by • 0
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237
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How to do pairwise multiple comparisons in MAST
MAST
11 months ago sysumed3615 • 0
0
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2
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288
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MAST compare two conditions with several donors
MAST
updated 11 months ago by • 0 • written 14 months ago by • 0
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3
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687
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MAST invalid Hypothesis, class objectORconnection error
R MAST scRNASeq
17 months ago TriS ▴ 200
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3
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428
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comparing 2 models with confounders with MAST (scRNA-seq DEA)
scRNA-seq MAST confounders
updated 2.0 years ago by ▴ 260 • written 2.0 years ago by ▴ 10
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1
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420
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About getting DE genes using MAST
MAST
updated 2.1 years ago by ▴ 260 • written 2.1 years ago by • 0
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0
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320
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DEG among experimental and control group in MAST
MAST DEG batch effects
2.3 years ago chendianyu • 0
0
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1
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430
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Minimum number of cells required for the MAST
MAST scRNAseq differential expression
2.4 years ago Andrew_McDavid ▴ 260
2
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3
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559
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Logistic regression in MAST - question
mast
updated 2.9 years ago by ▴ 260 • written 2.9 years ago by ▴ 70
2
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7
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703
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Estimation of non-trivial contrasts in MAST
mast
updated 2.9 years ago by ▴ 260 • written 2.9 years ago by ▴ 70
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0
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435
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How can I compute AIC for MAST hurdle model fitted in the whole dataset?
MAST AIC calcuation Parameters single cell hurdle model
3.0 years ago mcalgaro93 • 0
0
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2
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556
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Warning in bayes fit in MAST GSEA
MAST GSEA bayesglm.fit
3.4 years ago santos22903 • 0
0
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6
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671
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Error in zlm function model matrix
MAST
3.7 years ago jka8119 ▴ 10
2
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4
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910
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Interpretation of cngeneson when doing differential expression analysis in MAST
mast differential gene expression
updated 3.8 years ago by ▴ 260 • written 3.8 years ago by ▴ 40
2
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1
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1.1k
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MAST: testing differential expression with a nested factorial design
MAST single-cell rna-seq
updated 3.8 years ago by ▴ 260 • written 3.8 years ago by ▴ 20
2
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1
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482
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How to load data csv in MAST
mast
3.8 years ago francesco.brundu@gmail.com ▴ 40
0
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4
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656
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MAST: What does the function gseaAfterBoot do exactly?
MAST
3.8 years ago dfm2129 • 0
0
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8
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786
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MAST - not getting Hurdle p values
MAST
updated 3.9 years ago by ▴ 260 • written 3.9 years ago by ▴ 10
1
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3
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1.2k
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Using MAST with DropSeq data
MAST mast dropseq
updated 4.0 years ago by ▴ 260 • written 4.0 years ago by • 0
4
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3
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862
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single-cells RNA-seq analysis by MAST with unbalanced group size
mast single-cell rna-seq differential analysis
updated 4.1 years ago by ▴ 260 • written 4.1 years ago by ▴ 90
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2
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697
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What is the most useful distance measure to use for cell clustering based on MAST deviance residuals?
MAST
4.3 years ago alexanderaivazidis • 0
3
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3
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1.3k
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How do you test a contrast in MAST?
MAST single-cell differential gene expression
updated 4.4 years ago by ▴ 260 • written 4.4 years ago by ▴ 40
4
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1
reply
1.0k
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NAs in continuous coefficient and fold change in `zlm`
scrnaseq MAST differential gene expression
4.4 years ago Andrew_McDavid ▴ 260
2
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1
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2.4k
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Intepretation of Z scores for gene set enrichment analysis in MAST
MAST scRNA GSEA
updated 4.5 years ago by ▴ 260 • written 4.5 years ago by • 0
0
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3
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731
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Modeling Dose-response data in MAST
MAST sc-rnaseq scrnaseq
updated 4.5 years ago by ▴ 260 • written 4.5 years ago by • 0
0
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1
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726
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Removal of batch effects before non-linear clustering for scRNAseq
scrnaseq MAST
4.7 years ago Andrew_McDavid ▴ 260
3
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2
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1.2k
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MAST reported warning "Coefficients ... are never estimible and will be dropped."
mast sc-rnaseq
4.8 years ago shao ▴ 90
30 results • Page 1 of 1
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Comment: DiffBind dba.count Error in if (sum(tokeep) < length(tokeep)) by tjhwangxiong • 0
``` https://drive.google.com/drive/folders/1787thVatZpt_KFrfXY-aXV1m0FRm8Mhm?usp=sharing ``` Thanks for your reply. I have uploaded the fil…
Comment: Trying to follow a gene set analyisis in R by Michael Love 35k
No I can’t help with exercises. Just to be clear I’m not affiliated with Harvard and have no supported effort in relation to the edx classe…
Answer: Problems to find the pvalues via rowttests by Gordon Smyth 44k
Ordinary t-tests aren't recommended for genomic analyses because they have poor power and higher false discovery rates. Using the limma p…
Answer: How to insert a qvalues column in a dataframe with pvalues in R by Gordon Smyth 44k
Here and in a previous post, it seems you're not using recommended Bioconductor workflows for Affymetrix microarrays. If you used a standar…
Comment: Trying to follow a gene set analyisis in R by leonardorosas2001 • 0
Thank you. I hope I can still let you know if I have issues with your exercises. They are very challenging but useful! :)
Votes
Answer: Problems to find the pvalues via rowttests
A: How to use subSeq with DNAStringSet and information of GroupedIRanges?
A: How to use subSeq with DNAStringSet and information of GroupedIRanges?
Annotating GRanges with TxDb gene models using plyranges
plyranges select() when a metadata column is shared with core variable
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