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MAST
•
reset
0
votes
0
replies
211
views
How to interpret MAST coefficients
DifferentialExpression
MAST
3 months ago
Ismail
• 0
0
votes
0
replies
111
views
How does MAST caculate log fc
MAST
5 months ago
Chenghao
• 0
0
votes
0
replies
216
views
Differential expression with single cell data: any good two component (hurdle) models recently?
SingleCellWorkflow
DifferentialExpression
SingleCell
SingleCellMultiModal
MAST
7 months ago
Nik Tuzov
▴ 80
0
votes
0
replies
224
views
Performing DGE analysis with MAST on a variable with more than 2 levels
MAST
DEG
SingleCell
9 months ago
zroger499
• 0
0
votes
0
replies
325
views
Low logFCs using MAST for scRNA-seq
MAST
10 months ago
learner_MD
• 0
0
votes
0
replies
306
views
Issues geting meaninfull results for single cell DGE using MAST
MAST
SingleCell
12 months ago
zroger499
• 0
0
votes
0
replies
267
views
When I run `zlm` with several clusters, how to compare 1 cluster versus all the others?
MAST
18 months ago
Dan
• 0
0
votes
1
reply
423
views
Differentially expressed genes across three different conditions
MAST
SingleCell
diffGeneAnalysis
updated 19 months ago by
James W. MacDonald
62k • written 19 months ago by
sofia.puvogel
• 0
0
votes
1
reply
433
views
MAST zlm shows warning: Coefficients ... are never estimible and will be dropped.
MAST
updated 20 months ago by
shamsudheen
• 0 • written 23 months ago by
Helene
• 0
0
votes
0
replies
522
views
How to do pairwise multiple comparisons in MAST
MAST
24 months ago
sysumed3615
• 0
0
votes
2
replies
585
views
MAST compare two conditions with several donors
MAST
updated 2.0 years ago by
Emanuele
• 0 • written 2.2 years ago by
sofia.puvogel
• 0
0
votes
3
replies
988
views
MAST invalid Hypothesis, class objectORconnection error
R
MAST
scRNASeq
2.5 years ago
TriS
▴ 200
1
vote
3
replies
693
views
comparing 2 models with confounders with MAST (scRNA-seq DEA)
scRNA-seq
MAST
confounders
updated 3.1 years ago by
Andrew_McDavid
▴ 260 • written 3.1 years ago by
ramonmassoni
▴ 10
0
votes
1
reply
698
views
About getting DE genes using MAST
MAST
updated 3.1 years ago by
Andrew_McDavid
▴ 260 • written 3.1 years ago by
ahmed.abbas
• 0
0
votes
0
replies
508
views
DEG among experimental and control group in MAST
MAST
DEG
batch effects
3.4 years ago
chendianyu
• 0
0
votes
1
reply
872
views
Minimum number of cells required for the MAST
MAST
scRNAseq
differential expression
3.4 years ago
Andrew_McDavid
▴ 260
2
votes
3
replies
759
views
Logistic regression in MAST - question
mast
updated 3.9 years ago by
Andrew_McDavid
▴ 260 • written 3.9 years ago by
Nik Tuzov
▴ 80
2
votes
7
replies
1.0k
views
Estimation of non-trivial contrasts in MAST
mast
updated 3.9 years ago by
Andrew_McDavid
▴ 260 • written 3.9 years ago by
Nik Tuzov
▴ 80
0
votes
0
replies
654
views
How can I compute AIC for MAST hurdle model fitted in the whole dataset?
MAST
AIC calcuation
Parameters
single cell
hurdle model
4.0 years ago
mcalgaro93
• 0
0
votes
2
replies
741
views
Warning in bayes fit in MAST GSEA
MAST
GSEA
bayesglm.fit
4.4 years ago
santos22903
• 0
0
votes
6
replies
883
views
Error in zlm function model matrix
MAST
4.8 years ago
jka8119
▴ 10
2
votes
4
replies
1.2k
views
Interpretation of cngeneson when doing differential expression analysis in MAST
mast
differential gene expression
updated 4.8 years ago by
Andrew_McDavid
▴ 260 • written 4.8 years ago by
francesco.brundu@gmail.com
▴ 40
2
votes
1
reply
1.5k
views
MAST: testing differential expression with a nested factorial design
MAST
single-cell
rna-seq
updated 4.8 years ago by
Andrew_McDavid
▴ 260 • written 4.8 years ago by
khandarius
▴ 20
2
votes
1
reply
722
views
How to load data csv in MAST
mast
4.8 years ago
francesco.brundu@gmail.com
▴ 40
0
votes
4
replies
865
views
MAST: What does the function gseaAfterBoot do exactly?
MAST
4.9 years ago
dfm2129
• 0
0
votes
8
replies
1.1k
views
MAST - not getting Hurdle p values
MAST
updated 5.0 years ago by
Andrew_McDavid
▴ 260 • written 5.0 years ago by
jka8119
▴ 10
1
vote
3
replies
1.5k
views
Using MAST with DropSeq data
MAST
mast
dropseq
updated 5.0 years ago by
Andrew_McDavid
▴ 260 • written 5.0 years ago by
jeremycfd
• 0
4
votes
3
replies
1.1k
views
single-cells RNA-seq analysis by MAST with unbalanced group size
mast
single-cell
rna-seq
differential analysis
updated 5.1 years ago by
Andrew_McDavid
▴ 260 • written 5.1 years ago by
shao
▴ 100
0
votes
2
replies
877
views
What is the most useful distance measure to use for cell clustering based on MAST deviance residuals?
MAST
5.3 years ago
alexanderaivazidis
• 0
3
votes
3
replies
1.7k
views
How do you test a contrast in MAST?
MAST
single-cell
differential gene expression
updated 5.4 years ago by
Andrew_McDavid
▴ 260 • written 5.4 years ago by
Shian Su
▴ 40
4
votes
1
reply
1.3k
views
NAs in continuous coefficient and fold change in `zlm`
scrnaseq
MAST
differential gene expression
5.5 years ago
Andrew_McDavid
▴ 260
2
votes
1
reply
3.2k
views
Intepretation of Z scores for gene set enrichment analysis in MAST
MAST
scRNA
GSEA
updated 5.5 years ago by
Andrew_McDavid
▴ 260 • written 5.5 years ago by
siajunren
• 0
0
votes
3
replies
973
views
Modeling Dose-response data in MAST
MAST
sc-rnaseq
scrnaseq
updated 5.5 years ago by
Andrew_McDavid
▴ 260 • written 5.5 years ago by
eleanorahowe
• 0
0
votes
1
reply
901
views
Removal of batch effects before non-linear clustering for scRNAseq
scrnaseq
MAST
5.8 years ago
Andrew_McDavid
▴ 260
3
votes
2
replies
1.6k
views
MAST reported warning "Coefficients ... are never estimible and will be dropped."
mast
sc-rnaseq
5.8 years ago
shao
▴ 100
35 results • Page
1 of 1
Recent ...
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Comment: TCGA: clinical data and expression data
by
sharifnstu1203002m
• 0
Hello, I am in the same problem. I downloaded "transcriptome profiling" data of TCGA by using the Bioconductor package. I get my gene expr…
Comment: How to normalize long-read RNA-seq data for comparison with short-reads
by
Jonathan Göke
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Great to hear that you are using Bambu. Yes, I think that part of your question does not have one correct answer, there are many ways in wh…
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Choosing which samples to normalize together is not dependent on library size but rather on (1) whether the tissue samples are comparable a…
Comment: Atena package - error (new user)
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Thanks a lot, Calvo. Will run my files with revised version soon! Best regards, Lalani
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47k
Please post a new question with enough detail to answer your question. If you want bespoke advance, then you need to post the details of yo…
Votes
Comment: How to normalize long-read RNA-seq data for comparison with short-reads
Answer: Library sizes of miRNA sequencing data and TMM normalization with Edge-R
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Comment: Question about GWASTools gdsSubset
Comment: How to normalize long-read RNA-seq data for comparison with short-reads
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