Showing : MAST • reset
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211
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How to interpret MAST coefficients
DifferentialExpression MAST
3 months ago Ismail • 0
0
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0
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111
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How does MAST caculate log fc
MAST
5 months ago Chenghao • 0
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0
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216
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Differential expression with single cell data: any good two component (hurdle) models recently?
SingleCellWorkflow DifferentialExpression SingleCell SingleCellMultiModal MAST
7 months ago Nik Tuzov ▴ 80
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0
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224
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Performing DGE analysis with MAST on a variable with more than 2 levels
MAST DEG SingleCell
9 months ago zroger499 • 0
0
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0
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325
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Low logFCs using MAST for scRNA-seq
MAST
10 months ago learner_MD • 0
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0
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306
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Issues geting meaninfull results for single cell DGE using MAST
MAST SingleCell
12 months ago zroger499 • 0
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0
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267
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When I run `zlm` with several clusters, how to compare 1 cluster versus all the others?
MAST
18 months ago Dan • 0
0
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1
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423
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Differentially expressed genes across three different conditions
MAST SingleCell diffGeneAnalysis
updated 19 months ago by 62k • written 19 months ago by • 0
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1
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433
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MAST zlm shows warning: Coefficients ... are never estimible and will be dropped.
MAST
updated 20 months ago by • 0 • written 23 months ago by • 0
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0
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522
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How to do pairwise multiple comparisons in MAST
MAST
24 months ago sysumed3615 • 0
0
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2
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585
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MAST compare two conditions with several donors
MAST
updated 2.0 years ago by • 0 • written 2.2 years ago by • 0
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3
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988
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MAST invalid Hypothesis, class objectORconnection error
R MAST scRNASeq
2.5 years ago TriS ▴ 200
1
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3
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693
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comparing 2 models with confounders with MAST (scRNA-seq DEA)
scRNA-seq MAST confounders
updated 3.1 years ago by ▴ 260 • written 3.1 years ago by ▴ 10
0
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1
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698
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About getting DE genes using MAST
MAST
updated 3.1 years ago by ▴ 260 • written 3.1 years ago by • 0
0
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0
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508
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DEG among experimental and control group in MAST
MAST DEG batch effects
3.4 years ago chendianyu • 0
0
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1
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872
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Minimum number of cells required for the MAST
MAST scRNAseq differential expression
3.4 years ago Andrew_McDavid ▴ 260
2
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3
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759
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Logistic regression in MAST - question
mast
updated 3.9 years ago by ▴ 260 • written 3.9 years ago by ▴ 80
2
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7
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1.0k
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Estimation of non-trivial contrasts in MAST
mast
updated 3.9 years ago by ▴ 260 • written 3.9 years ago by ▴ 80
0
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0
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654
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How can I compute AIC for MAST hurdle model fitted in the whole dataset?
MAST AIC calcuation Parameters single cell hurdle model
4.0 years ago mcalgaro93 • 0
0
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2
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741
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Warning in bayes fit in MAST GSEA
MAST GSEA bayesglm.fit
4.4 years ago santos22903 • 0
0
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6
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883
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Error in zlm function model matrix
MAST
4.8 years ago jka8119 ▴ 10
2
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4
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1.2k
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Interpretation of cngeneson when doing differential expression analysis in MAST
mast differential gene expression
updated 4.8 years ago by ▴ 260 • written 4.8 years ago by ▴ 40
2
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1
reply
1.5k
views
MAST: testing differential expression with a nested factorial design
MAST single-cell rna-seq
updated 4.8 years ago by ▴ 260 • written 4.8 years ago by ▴ 20
2
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1
reply
722
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How to load data csv in MAST
mast
4.8 years ago francesco.brundu@gmail.com ▴ 40
0
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4
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865
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MAST: What does the function gseaAfterBoot do exactly?
MAST
4.9 years ago dfm2129 • 0
0
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8
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1.1k
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MAST - not getting Hurdle p values
MAST
updated 5.0 years ago by ▴ 260 • written 5.0 years ago by ▴ 10
1
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3
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1.5k
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Using MAST with DropSeq data
MAST mast dropseq
updated 5.0 years ago by ▴ 260 • written 5.0 years ago by • 0
4
votes
3
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1.1k
views
single-cells RNA-seq analysis by MAST with unbalanced group size
mast single-cell rna-seq differential analysis
updated 5.1 years ago by ▴ 260 • written 5.1 years ago by ▴ 100
0
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2
replies
877
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What is the most useful distance measure to use for cell clustering based on MAST deviance residuals?
MAST
5.3 years ago alexanderaivazidis • 0
3
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3
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1.7k
views
How do you test a contrast in MAST?
MAST single-cell differential gene expression
updated 5.4 years ago by ▴ 260 • written 5.4 years ago by ▴ 40
4
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1
reply
1.3k
views
NAs in continuous coefficient and fold change in `zlm`
scrnaseq MAST differential gene expression
5.5 years ago Andrew_McDavid ▴ 260
2
votes
1
reply
3.2k
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Intepretation of Z scores for gene set enrichment analysis in MAST
MAST scRNA GSEA
updated 5.5 years ago by ▴ 260 • written 5.5 years ago by • 0
0
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3
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973
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Modeling Dose-response data in MAST
MAST sc-rnaseq scrnaseq
updated 5.5 years ago by ▴ 260 • written 5.5 years ago by • 0
0
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1
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901
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Removal of batch effects before non-linear clustering for scRNAseq
scrnaseq MAST
5.8 years ago Andrew_McDavid ▴ 260
3
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2
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1.6k
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MAST reported warning "Coefficients ... are never estimible and will be dropped."
mast sc-rnaseq
5.8 years ago shao ▴ 100
35 results • Page 1 of 1
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Comment: TCGA: clinical data and expression data by sharifnstu1203002m • 0
Hello, I am in the same problem. I downloaded "transcriptome profiling" data of TCGA by using the Bioconductor package. I get my gene expr…
Comment: How to normalize long-read RNA-seq data for comparison with short-reads by Jonathan Göke ▴ 40
Great to hear that you are using Bambu. Yes, I think that part of your question does not have one correct answer, there are many ways in wh…
Answer: Library sizes of miRNA sequencing data and TMM normalization with Edge-R by Gordon Smyth 47k
Choosing which samples to normalize together is not dependent on library size but rather on (1) whether the tissue samples are comparable a…
Comment: Atena package - error (new user) by lalanis1 • 0
Thanks a lot, Calvo. Will run my files with revised version soon! Best regards, Lalani
Comment: Nested paired design with covariates in limma by Gordon Smyth 47k
Please post a new question with enough detail to answer your question. If you want bespoke advance, then you need to post the details of yo…
Votes
Comment: How to normalize long-read RNA-seq data for comparison with short-reads
Answer: Library sizes of miRNA sequencing data and TMM normalization with Edge-R
C: Can't install TopmedPipeline Package
Comment: Question about GWASTools gdsSubset
Comment: How to normalize long-read RNA-seq data for comparison with short-reads
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