Showing : MAST • reset
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Differentially expressed genes across three different conditions
MAST SingleCell diffGeneAnalysis
updated 27 days ago by 57k • written 27 days ago by • 0
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1
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118
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MAST zlm shows warning: Coefficients ... are never estimible and will be dropped.
MAST
updated 7 weeks ago by • 0 • written 5 months ago by • 0
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132
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How to do pairwise multiple comparisons in MAST
MAST
5 months ago sysumed3615 • 0
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2
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187
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MAST compare two conditions with several donors
MAST
updated 5 months ago by • 0 • written 8 months ago by • 0
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3
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508
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MAST invalid Hypothesis, class objectORconnection error
R MAST scRNASeq
11 months ago TriS ▴ 200
1
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3
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300
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comparing 2 models with confounders with MAST (scRNA-seq DEA)
scRNA-seq MAST confounders
updated 18 months ago by ▴ 260 • written 18 months ago by ▴ 10
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1
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300
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About getting DE genes using MAST
MAST
updated 19 months ago by ▴ 260 • written 19 months ago by • 0
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243
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DEG among experimental and control group in MAST
MAST DEG batch effects
22 months ago chendianyu • 0
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1
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270
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Minimum number of cells required for the MAST
MAST scRNAseq differential expression
23 months ago Andrew_McDavid ▴ 260
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3
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443
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Logistic regression in MAST - question
mast
updated 2.4 years ago by ▴ 260 • written 2.4 years ago by ▴ 70
2
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7
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553
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Estimation of non-trivial contrasts in MAST
mast
updated 2.4 years ago by ▴ 260 • written 2.4 years ago by ▴ 70
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333
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How can I compute AIC for MAST hurdle model fitted in the whole dataset?
MAST AIC calcuation Parameters single cell hurdle model
2.5 years ago mcalgaro93 • 0
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2
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459
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Warning in bayes fit in MAST GSEA
MAST GSEA bayesglm.fit
2.9 years ago santos22903 • 0
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6
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563
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Error in zlm function model matrix
MAST
3.2 years ago jka8119 ▴ 10
2
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4
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724
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Interpretation of cngeneson when doing differential expression analysis in MAST
mast differential gene expression
updated 3.3 years ago by ▴ 260 • written 3.3 years ago by ▴ 40
2
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1
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881
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MAST: testing differential expression with a nested factorial design
MAST single-cell rna-seq
updated 3.3 years ago by ▴ 260 • written 3.3 years ago by ▴ 20
2
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1
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410
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How to load data csv in MAST
mast
3.3 years ago francesco.brundu@gmail.com ▴ 40
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4
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546
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MAST: What does the function gseaAfterBoot do exactly?
MAST
3.3 years ago dfm2129 • 0
0
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8
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663
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MAST - not getting Hurdle p values
MAST
updated 3.4 years ago by ▴ 260 • written 3.4 years ago by ▴ 10
1
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3
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945
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Using MAST with DropSeq data
MAST mast dropseq
updated 3.5 years ago by ▴ 260 • written 3.5 years ago by • 0
4
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3
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744
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single-cells RNA-seq analysis by MAST with unbalanced group size
mast single-cell rna-seq differential analysis
updated 3.6 years ago by ▴ 260 • written 3.6 years ago by ▴ 90
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2
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574
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What is the most useful distance measure to use for cell clustering based on MAST deviance residuals?
MAST
3.8 years ago alexanderaivazidis • 0
3
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3
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1.2k
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How do you test a contrast in MAST?
MAST single-cell differential gene expression
updated 3.9 years ago by ▴ 260 • written 3.9 years ago by ▴ 40
4
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1
reply
884
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NAs in continuous coefficient and fold change in `zlm`
scrnaseq MAST differential gene expression
4.0 years ago Andrew_McDavid ▴ 260
2
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1
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2.1k
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Intepretation of Z scores for gene set enrichment analysis in MAST
MAST scRNA GSEA
updated 4.0 years ago by ▴ 260 • written 4.0 years ago by • 0
0
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3
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621
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Modeling Dose-response data in MAST
MAST sc-rnaseq scrnaseq
updated 4.0 years ago by ▴ 260 • written 4.0 years ago by • 0
0
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1
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659
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Removal of batch effects before non-linear clustering for scRNAseq
scrnaseq MAST
4.2 years ago Andrew_McDavid ▴ 260
3
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2
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1.0k
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MAST reported warning "Coefficients ... are never estimible and will be dropped."
mast sc-rnaseq
4.3 years ago shao ▴ 90
28 results • Page 1 of 1
Recent ...
Replies
Comment: DESeq2 question: why I got discrepancy results for DEGs when using different way by Ming ▴ 350
Thx for the advice about the reference levels, in which I did do as you suggested! In fact, I even tried more options just want to see why…
Answer: Time series DE gene analysis with edgeR where specific timepoints have NA levels by Gordon Smyth 43k
> is there a way to incorporate also the information of the additional samples that lack any of the aforementioned levels? NA values are n…
Comment: Time series DE gene analysis with edgeR where specific timepoints have NA levels by James W. MacDonald 57k
The `voomLmFit` function will automatically fit a linear mixed model accounting for within-subject correlations if you block on patient, so…
Comment: error in getBM (biomaRt): "error: no such table: metadata" by Mike Smith ★ 5.0k
Thanks for providing this solution. Anyone else encountering the issue can test if the cache is a problem by running `getBM()` with the ar…
Comment: Time series DE gene analysis with edgeR where specific timepoints have NA levels by svlachavas ▴ 780
Dear James, thank you very much for your comment; please excuse me for my naïve additional question, but is there an example in the edgeR …
Votes
tximeta error in fetching genome info
Answer: error in getBM (biomaRt): "error: no such table: metadata"
C: DESeq2 design formula: single control for multiple conditions [RIP-seq]
DESeq2 testing ratio of ratios (RIP-Seq, CLIP-Seq, ribosomal profiling)
Answer: cannot install edgeR on M1 Mac
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