Bioconductor Easyrnaseq

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easyRNASeq easyRNASeq

updated 13.1 years ago by RenéBöttcher ▴ 20 • written 13.1 years ago by delhomme@embl.de ★ 1.2k

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miRNA Annotation easyRNASeq miRNA Annotation easyRNASeq

13.1 years ago delhomme@embl.de ★ 1.2k

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RNASeq Annotation Organism BSgenome BSgenome easyRNASeq RNASeq Annotation Organism

updated 13.1 years ago by delhomme@embl.de ★ 1.2k • written 13.1 years ago by Guest User ★ 13k

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GO Infrastructure Rsubread easyRNASeq GO Infrastructure Rsubread easyRNASeq

updated 13.1 years ago by Valerie Obenchain ★ 6.8k • written 13.1 years ago by Mark Robinson ▴ 880

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Organism edgeR easyRNASeq Organism edgeR easyRNASeq

13.2 years ago • updated 13.1 years ago delhomme@embl.de ★ 1.2k

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easyRNASeq easyRNASeq

updated 13.2 years ago by Sean Davis 21k • written 13.2 years ago by Loraine, Ann ▴ 50

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RNASeq Annotation GUI Cancer BSgenome BSgenome easyRNASeq RNASeq Annotation GUI Cancer

updated 13.2 years ago by delhomme@embl.de ★ 1.2k • written 13.2 years ago by Richard Friedman ★ 2.0k

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GO PROcess DESeq easyRNASeq GO PROcess DESeq easyRNASeq

updated 13.2 years ago by Jorge Beira ▴ 10 • written 13.3 years ago by delhomme@embl.de ★ 1.2k

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Category DESeq easyRNASeq Category DESeq easyRNASeq

updated 13.3 years ago by Wolfgang Huber ★ 13k • written 13.3 years ago by Akula, Nirmala NIH/NIMH [C] ▴ 190

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Annotation Organism BSgenome convert BSgenome easyRNASeq Annotation Organism BSgenome

13.3 years ago delhomme@embl.de ★ 1.2k

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easyRNASeq easyRNASeq

updated 13.4 years ago by Akula, Nirmala NIH/NIMH [C] ▴ 190 • written 13.4 years ago by delhomme@embl.de ★ 1.2k

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Annotation PROcess easyRNASeq Annotation PROcess easyRNASeq

updated 13.5 years ago by delhomme@embl.de ★ 1.2k • written 13.5 years ago by Yates, Steven A ▴ 10

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RNASeq Annotation Organism biomaRt easyRNASeq RNASeq Annotation Organism biomaRt

updated 13.6 years ago by Davis, Wade ▴ 350 • written 13.6 years ago by delhomme@embl.de ★ 1.2k

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Sequencing Alignment Annotation Organism BSgenome biomaRt BSgenome easyRNASeq Sequencing

13.6 years ago delhomme@embl.de ★ 1.2k

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RNASeq Annotation BSgenome convert biomaRt BSgenome IRanges DESeq easyRNASeq RNASeq

13.7 years ago delhomme@embl.de ★ 1.2k

65 results • Page 2 of 2

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Comment: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames by ubjw24 • 0

Thank you for your replies. I got the problem solved by installing mutSignature with this line: ``` devtools::install_github("dami82/mutS…

Comment: DESeq2 design for haplotype MPRA by Rita • 0

Thank you very much, I appreciate it!

Answer: DESeq2 design for haplotype MPRA by Michael Love 43k

> My goal is to identify which non-reference haplotypes are differentially active compared to the corresponding ref/ref haplotype within ea…

Answer: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames by James W. MacDonald 68k

It seems fine on devel as well. ``` > BSgenome.Hsapiens.UCSC.hg38 | BSgenome object for Human | - organism: Homo sapiens | - provide…

Comment: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames by James W. MacDonald 68k

R-4.5.1 is compatible with both release and devel versions of Bioconductor. Which one are you using? I am still on release, and it's fine: …

Votes

Comment: Check removeBatchEffect effectiveness

Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?

Answer: DESeq2 design for haplotype MPRA

A: Different logFC (log2foldchange) values for genes from limma-voom and other too

Comment: Check removeBatchEffect effectiveness

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