Biostar Enrichkegg

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clusterProfiler enrichKEGG

updated 9 months ago by Guido Hooiveld ★ 3.5k • written 9 months ago by blim4 • 0

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1.6k

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clusterProfiler enrichKEGG cnetplot

14 months ago fatimaruizdelabastida • 0

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750

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enrichplot clusterProfiler enrichKEGG gseKEGG

3.9 years ago yurigorelik ▴ 10

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465

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enrichKEGG GeneRatio

3.9 years ago zhang.jianhai ▴ 10

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839

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kegg enrichkegg clusterprofiler

4.5 years ago bekah ▴ 20

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2.2k

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clusterprofiler kaas enrichKEGG

updated 5.5 years ago by renuka.nayak • 0 • written 6.4 years ago by googneed • 0

6 results • Page 1 of 1

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Comment: transcript name mapping between human and mouse by Eric • 0

It works very well, and thanks for such a great answer! Because I use the old version gtf from GENECODE (vM12), the id version does not mat…

Comment: How to normalize long-read RNA-seq data for comparison with short-reads by Bernardo • 0

Just did that, thank you for the suggestion.

Comment: Empty ChipQC Report by Okan • 0

Hi, I have the same issue. Have you found any solution or any reason why this is happening?

Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by Gordon Smyth 47k

Am I understanding correctly that you have 24 RNA-seq libraries in total, 6 from the pooled samples and 18 from regular samples with biolog…

Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by k.roelfs • 0

I'm sorry, I know it is kinda confusing... We have 6 pools in total: Phenotype A: T1a, T2, T1b, T1c Phenotype B: T1, T2 Each pool consist…

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Answer: transcript name mapping between human and mouse

Comment: How to normalize long-read RNA-seq data for comparison with short-reads

Volcano Plot in R

Answer: Replicating iDEP parameters in DESeq2; two conditions and an interaction term.

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