Showing : enrichplot • reset
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137
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compareCluster dotplot: how to modify the genesets order
DOSE enrichplot clusterProfiler
updated 11 days ago by ★ 3.9k • written 15 days ago by • 0
2
votes
2
replies
243
views
padj-based gradient scale from barplot (clusterProfiler results) does not work properly
enrichplot barplot clusterProfiler
5 weeks ago Eva ▴ 10
2
votes
6
replies
976
views
Looking for documentation about the use of "split = .sign" in enrichplot's dotplot
enrichplot
12 weeks ago • updated 9 weeks ago Tobias • 0
0
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1
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237
views
visualizing GSEA showCategory question
enrichplot
updated 3 months ago by 65k • written 3 months ago by • 0
0
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2
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591
views
enrichPlot error when plotting topGO results
topGO enrichplot
updated 6 months ago by 65k • written 6 months ago by • 0
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0
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346
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HeatPlot - Genes selections
enrichplot stringr heatplot
7 months ago ruba-mahmoud • 0
0
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3
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1.3k
views
gseaplot2 from enrichplot for gene set enrichment analysis comparing two datasets
enrichplot GSEA clusterProfiler
updated 6 months ago by • 0 • written 8 months ago by • 0
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5
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1.0k
views
plot enrichment results
enrichplot clusterProfiler
updated 9 months ago by ▴ 730 • written 10 months ago by • 0
2
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4
replies
1.5k
views
Change dotsize to be the same in multiple plots - enrichplot dotplot
enrichplot clusterProfiler
11 months ago Tyroone • 0
0
votes
1
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1.2k
views
Am I able to add gene names/symbols to an enrichGO() output?
clusterProfiler enrichplot
updated 13 months ago by ★ 3.9k • written 13 months ago by • 0
0
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1
reply
654
views
Libraries loading error
DESeq2 clusterProfiler enrichplot
updated 15 months ago by 41k • written 15 months ago by • 0
0
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5
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2.0k
views
How can I limit the number of displayed genes in heatplot
heatplot enrichplot
updated 7 months ago by • 0 • written 16 months ago by • 0
2
votes
3
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2.2k
views
GSEA only returning 1 GO term - unable to map Ensembl IDs with decimals?
AnnotationDbi GO clusterProfiler enrichplot ensembldb
updated 19 months ago by ▴ 120 • written 19 months ago by ▴ 10
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1
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1.5k
views
Treeplot by enrichplot
clusterProfiler enrichplot treeplot
updated 18 months ago by ★ 1.2k • written 19 months ago by • 0
3
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5
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3.1k
views
how to color specific node or gene symbol from cnetplot ?
clusterProfiler enrichplot cnetplot GuangchuangYu
updated 20 months ago by ★ 1.2k • written 23 months ago by ▴ 30
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3
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3.6k
views
Unable to generate a dotplot to view the enrichment analysis results (clusterProfiler/ enrichplot)
clusterProfiler enrichplot clusterpro doseR dose
updated 21 months ago by ★ 3.9k • written 21 months ago by ▴ 10
0
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1
reply
971
views
Dotplot from enricher outputting very few genes
clusterProfiler enrichplot
updated 22 months ago by ★ 3.9k • written 22 months ago by ▴ 10
1
vote
3
replies
5.4k
views
GSVA and ssGSEA output differences
enrichment GSVA enrichplot ssGSEA
updated 2.1 years ago by ★ 3.3k • written 2.1 years ago by • 0
0
votes
1
reply
1.0k
views
Cluster Profiler output not the same as Enrichr output
enrichplot clusterProfiler
updated 2.1 years ago by • 0 • written 2.2 years ago by ▴ 10
5
votes
13
replies
4.1k
views
Getting error
enrichplot clusterProfiler org.Hs.eg.db
updated 2.1 years ago by ▴ 40 • written 2.1 years ago by • 0
1
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1
reply
1.4k
views
How to keep cells square in heatplot function of enrichplot
clusterProfiler enrichplot heatplot
2.4 years ago fatimaruizdelabastida • 0
0
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1
reply
1.3k
views
convert regular data matrix or data frame to enrichResult object for bioconductor package enrichplot
enrichplot
updated 2.4 years ago by • 0 • written 2.4 years ago by ▴ 10
0
votes
2
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1.4k
views
Unable to open igraph.so even though the file is present.
enrichplot clusterProfiler R
2.5 years ago Adarsh • 0
2
votes
4
replies
2.6k
views
enrichDGN result can't be visualised by barplot
enrichplot
2.6 years ago Pahi ▴ 10
0
votes
0
replies
1.3k
views
EnrichGO
R enrichplot
updated 2.7 years ago by ★ 3.9k • written 2.7 years ago by • 0
1
vote
4
replies
3.9k
views
Issues with scaling down enrichplot's dotplot and gseaplot2 plots
RNASeq clusterProfiler enrichplot
updated 2.1 years ago by • 0 • written 2.8 years ago by • 0
2
votes
6
replies
6.3k
views
color scale in cnetplot (enrichplot) is not centered in 0, skewed towards positive values
enrichplot clusterProfiler
3.3 years ago Emilia ▴ 30
0
votes
1
reply
1.4k
views
Cut down genes displayed on x axis from enrichPlot's heatplot() function
clusterProfiler GeneSetEnrichment enrichplot
updated 3.3 years ago by ▴ 30 • written 3.4 years ago by • 0
2
votes
1
reply
697
views
Parsing geoms to enrichplot
enrichplot
3.7 years ago Francois Marchildon ▴ 20
0
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0
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948
views
similarity coefficients used in emapplot {enrichplot} / gsePathway {ReactomePA} and simplify {clusterProfiler}
enrichplot ReactomePA clusterProfiler similarity coefficients emapplot
4.0 years ago jan.soderman • 0
0
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1
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2.0k
views
emapplot (enrichplot) with compareCluster object does not work
emapplot enrichplot clusterProfiler compareCluster
updated 4.2 years ago by ★ 3.9k • written 4.2 years ago by • 0
2
votes
4
replies
2.1k
views
Visualization of Functional Enrichment Result with enrichplot: How to control label size?
clusterProfiler enrichplot cnetplot
updated 4.3 years ago by 65k • written 4.3 years ago by ▴ 30
8
votes
5
replies
4.0k
views
Using the plotting functions of clusterProfiler / enrichplot with enrichment results from other programs
clusterProfiler enrichplot
5.0 years ago • updated 22 months ago charles.foster ▴ 160
0
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0
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1.1k
views
enrichplot packages - is there a way of dropping specific KEGG classes
enrichplot clusterProfiler enrichKEGG gseKEGG
5.2 years ago yurigorelik ▴ 10
0
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0
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1.5k
views
Moving around nodes using emapplot {enrichplot} or enrichMap {DOSE}
enrichment map emapplot enrichplot enrichMap DOSE
5.9 years ago jan.soderman • 0
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Comment: Deseq2. decontXcounts not integers. Useful alternative? by ATpoint ★ 4.0k
I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…
Answer: Improving the design matrices vignette in RNAseq123 by Gordon Smyth 50k
Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0
Thank you for your comment! I'll review my code from top to bottom.
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;
Votes
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
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