Bioconductor EnsemblID

Showing : ensemblID • reset

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3

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ensemblid

updated 5.8 years ago by Michael Love 43k • written 5.8 years ago by rajeshparmar4 ▴ 10

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7

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software error ensemblID conversion

updated 6.2 years ago by James W. MacDonald 68k • written 6.2 years ago by mlee • 0

2

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2

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3.8k

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GOseq ensemblid GO

updated 6.8 years ago by James W. MacDonald 68k • written 6.8 years ago by mico • 0

3 results • Page 1 of 1

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Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by snijesh ▴ 200

I would like to clarify whether the command `res <- results(dds, name = "phaseLP.conditionTreated")` is the correct approach to generate …

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by James W. MacDonald 68k

Not sure I understand. You ask how to do something and then show how one would do so.

Comment: DiffBind getting Fold values of near 0 by littlefishes20 ▴ 10

Same issues. All peaks return to a fold near 0, although they are significant when visualizing in IGV. Please find the MAplot and volcanoPl…

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by snijesh ▴ 200

I have checked DEGs between Solvent Control (SC) of FP and LP and there are noticebale differences in terms of DEGs. ``` # Checking SC in …

Answer: A0A287BB68 not recognized as UNPROT key in org.Ss.eg.db using AnnotationDbi::sel by James W. MacDonald 68k

Apparently it's been over-ridden by a different UniProtKB ID ``` > select(org.Ss.eg.db, "MYH11", "UNIPROT", "SYMBOL") 'select()' retu…

Votes

Can NanoString data be analyzed using DESeq2?

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