Showing : GOseq • reset
0
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141
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Downstream analysis with Differentially Expressed Genes
DESeq2 GO goseq FunctionalAnnotation
updated 12 weeks ago by ▴ 10 • written 3 months ago by • 0
0
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5
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592
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GO enrichment with non-model organism, supplying GO mappings
clusterProfiler goseq topGO DESeq2
updated 8 months ago by 62k • written 8 months ago by ▴ 10
0
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2
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390
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goseq: Wallenius Vs Fisher's Noncentral Hypergeometric Distribution
goseq
9 months ago Steve Pederson ▴ 170
1
vote
2
replies
344
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Pathway analysis of RNAseq data using goseq package
Pathways goseq RNASeqData
11 months ago • updated 10 months ago m.glymenaki • 0
0
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0
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294
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Gage pathway analysis of RNAseq graphical representation as dot plot
gage plot RNASeq goseq
updated 11 months ago by 39k • written 11 months ago by • 0
1
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10
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1.4k
views
How to run Goseq for list of ensembl gene IDs
goseq
22 months ago Lucky • 0
1
vote
4
replies
805
views
goseq package loading issues
DESeq2 goseq
23 months ago avinashi • 0
3
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9
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996
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Warning message when performing Gene Ontology analysis with goseq using hg38
goseq
updated 23 months ago by 62k • written 24 months ago by • 0
2
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3
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886
views
Gene Ontology Analysis of DE Genes
clusterProfiler AnnotationDbi OrgDb goseq
updated 2.0 years ago by 62k • written 2.0 years ago by ▴ 20
2
votes
2
replies
593
views
Pathway analysis and GO terms analysis with goseq
KEGG Pathways GO goseq
updated 2.2 years ago by 62k • written 2.2 years ago by • 0
0
votes
1
reply
509
views
non-native GO annotation cannot be successfully introduced into Goseq
goseq rnaseq r
updated 2.3 years ago by 62k • written 2.3 years ago by • 0
1
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2
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471
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GOSeq analysis in rice
goseq
2.6 years ago • updated 2.5 years ago nabiyogesh ▴ 10
0
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2
replies
366
views
Goseq_analysis related help
goseq
2.6 years ago kumararya563 • 0
0
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0
replies
284
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go seq related help, where I need to do mapping between go term and the protein -id
goseq
2.6 years ago kumararya563 • 0
3
votes
2
replies
569
views
Goseq analysis related help.
annotation goseq
updated 2.7 years ago by 13k • written 2.7 years ago by • 0
0
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0
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435
views
How to identify differentially expressed genes from Reactome pathways enriched according to GOseq?
goseq go rna-seq
2.8 years ago hasse.bossenbroek • 0
4
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5
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1.2k
views
Downgrading R to 3.6.0 version (GOseq problem)
goseq installation
3.1 years ago gdalsky ▴ 40
0
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1
reply
1.4k
views
GO enrichment analysis graphs after goseq: any easy solutions?
go enrichment gene ontology goseq go
3.4 years ago Raito92 ▴ 60
2
votes
6
replies
630
views
Can't install GOSEQ (dependency problem) on CentOS 7!
goseq r package r
updated 3.4 years ago by ★ 5.9k • written 3.4 years ago by ▴ 60
1
vote
1
reply
811
views
GOseq analysis with only upregulated or downregulated genes
goseq
updated 3.8 years ago by ▴ 310 • written 3.8 years ago by ▴ 140
2
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2
replies
638
views
Using GOseq for custom gene set enrichment test
goseq
updated 4.0 years ago by 47k • written 4.0 years ago by • 0
0
votes
2
replies
1.5k
views
How to access gene IDs associated with GO terms in GOSeq
GOseq ensemblid GO
updated 4.2 years ago by 62k • written 4.2 years ago by • 0
4
votes
10
replies
2.3k
views
Question: GoSeq: opposite pwf plot for up- and downregulated genes
goseq
7.3 years ago • updated 4.3 years ago Jakub ▴ 50
1
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3
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1.2k
views
goseq: Formatting category list for use with goseq
goseq category test
updated 4.4 years ago by 62k • written 4.4 years ago by ▴ 30
0
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0
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554
views
how to: enrichment (over representation) analysis of GWAS/QTL data distributed over a genome with GOSEQ
goseq enrichment GWAS
4.5 years ago zhu • 0
0
votes
1
reply
753
views
GOseq output but strange warning message!
GOseq GO pwf goseq
4.5 years ago TB18 • 0
1
vote
1
reply
712
views
Goseq output with too many GO terms per category
go goseq goterm category
updated 4.5 years ago by 47k • written 4.5 years ago by • 0
3
votes
2
replies
673
views
numInCat in goseq inconsistent with value obtained from org.Hs.eg.db
goseq
updated 4.5 years ago by 62k • written 4.5 years ago by • 0
1
vote
9
replies
1.4k
views
Using goseq with unsupported organism
goseq
updated 4.6 years ago by 62k • written 4.6 years ago by • 0
0
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0
replies
606
views
GOseq No Underrepresented Categories
goseq go enrichment
4.6 years ago mart1139 • 0
8
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10
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1000
views
Genes listed in GO categories
goseq biomart
updated 4.6 years ago by 47k • written 4.7 years ago by • 0
0
votes
2
replies
590
views
goseq with hypergeometric method
goseq
updated 4.7 years ago by 47k • written 4.7 years ago by ▴ 40
0
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0
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942
views
I finally solved my problem with installing "org.Hs.eg.db"!
goseq org.hs.eg.db
4.8 years ago nancyjwahl7 • 0
2
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6
replies
1.4k
views
Can Tximport average transcript length be used for GOSeq?
deseq2 tximport goseq
4.9 years ago casey.rimland ▴ 150
0
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6
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963
views
How to link methylation code from UCSC (hg19-cg07790169) to ENSEMBL genome code (goseq procedure)
goseq methylation ensembl ucsc limma
5.0 years ago • updated 4.9 years ago dusan.petrovic • 0
0
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2
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2.8k
views
DESeq2 followed by goseq GO-analysis: Extracting DE genes of enriched GO category
deseq2 goseq rnaseq go enrichment differential gene expression
updated 5.0 years ago by 39k • written 5.0 years ago by • 0
0
votes
3
replies
777
views
What is the impact of using GOSeq to voom-adjusted RNA-seq Expressions ?
limma limma-voom goseq
updated 5.0 years ago by 47k • written 5.0 years ago by • 0
0
votes
1
reply
2.2k
views
installation of package 'goseq' had non-zero exit status
goseq installation
updated 5.2 years ago by 25k • written 5.2 years ago by • 0
0
votes
1
reply
1.2k
views
PANTHER.db- external pointer error
goseq pantherdb pathway analysis gene ontology
updated 5.2 years ago by 62k • written 5.2 years ago by ▴ 10
1
vote
2
replies
2.3k
views
GOseq: Determining ENSG IDs Associated with Genes Summarized by `numDEInCat` for Each Ontology Term
goseq gene ontology
updated 5.3 years ago by 62k • written 5.3 years ago by • 0
0
votes
1
reply
837
views
Error: subscript out of bounds when using ucscGenomes() and supportedGenomes() functions in goseq and rtracklayer packages respctively
goseq rtracklayer
5.3 years ago mgdrnl • 0
2
votes
3
replies
1.1k
views
GOseq error on running nullp
goseq GO term
updated 5.3 years ago by 47k • written 5.3 years ago by • 0
0
votes
1
reply
1.6k
views
GO.db won't install for using goseq package
GO.db goseq package installation error
updated 5.4 years ago by 25k • written 5.4 years ago by • 0
0
votes
2
replies
1.1k
views
bias.data vector must have the same length as DEgenes vector!
edger goseq
updated 5.4 years ago by ★ 28k • written 5.4 years ago by ▴ 10
0
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0
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830
views
gene length file for GOseq
goseq
5.4 years ago mictadlo ▴ 10
2
votes
2
replies
957
views
Error in normSplitFactor(f, x)
GenomicRanges rtracklayer goseq
updated 5.4 years ago by 11k • written 5.4 years ago by ▴ 10
0
votes
3
replies
1.1k
views
goseq after edgeR
edger goseq
updated 5.4 years ago by ★ 28k • written 5.4 years ago by ▴ 10
0
votes
2
replies
1.2k
views
GOseq: Correct for gene length or read count?
goseq dexseq
5.5 years ago i.sudbery ▴ 30
1
vote
1
reply
2.3k
views
goseq: In pcls(G) : initial point very close to some inequality constraints
goseq warning message pwf mgcv
updated 5.5 years ago by ▴ 310 • written 5.5 years ago by ▴ 10
1
vote
1
reply
979
views
PANTHER.db function not found
pantherdb goseq biomart
updated 5.5 years ago by ★ 5.9k • written 5.5 years ago by ▴ 10
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Comment: CoGAPS Installation Problem - clang compiler does not support '-march=native' by MayerAdam • 0
I just installed the package. The compilation did not fail this time! There appears to be a few minor errors during the installation: 1. C…
Comment: CoGAPS Installation Problem - clang compiler does not support '-march=native' by MayerAdam • 0
Thanks for the reply! My apologies for the very late response. MacOS Version: 12.5 Xcode tools version: 14.0.0 (This is the same as clang …
Answer: Subread installation on Linux ARM64 by Yang Liao ▴ 350
The Subread and Rsubread packages only support the x86_64 architecture so far.
Comment: Samtools markdup in Rsamtools by Martin Morgan 25k
For completeness, an initial answer on a [GitHub issue on the same topic][1]. [1]: https://github.com/Bioconductor/Rsamtools/issues/51
Answer: nullranges by Michael Love 39k
Thanks for posting here. So you want to move the small RNA loci around the genome? Do they tend to cluster? For mouse or human genom…
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Comment: CoGAPS Installation Problem - clang compiler does not support '-march=native'
Comment: CoGAPS Installation Problem - clang compiler does not support '-march=native'
Comment: Sva and batch effect
Answer: Sva and batch effect
Answer: Sva and batch effect
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