Bioconductor FeatureCount

Showing : featureCount • reset

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809

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featureCount Rsubread HPC

2.1 years ago kthapa • 0

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2.0k

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DESeq2 FeatureCount

updated 3.2 years ago by ATpoint ★ 5.0k • written 3.2 years ago by Jiayi • 0

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1.1k

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ExomeSeq featureCount

4.0 years ago adR ▴ 40

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2.4k

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featurecount rsubread GenomicAlignments

5.6 years ago Konstantinos Yeles ▴ 90

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3.7k

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dexseq rsubread featureCount software error

updated 5.9 years ago by Yang Liao ▴ 450 • written 5.9 years ago by seung.ho.steven.choi • 0

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2.7k

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featureCount rna-seq gene_id re_gene_id stringtie

updated 6.8 years ago by Wei Shi ★ 3.6k • written 6.8 years ago by IRAIA.MAIALEN • 0

6 results • Page 1 of 1

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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

Votes

Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

Answer: Important: Bioconductor Release 3.22 Delayed

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