Showing : featureCount • reset
0
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886
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Fatal error: Wrong thread calling 'RunFinalizers'
featureCount Rsubread HPC
2.4 years ago kthapa • 0
0
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2
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2.1k
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output file conversion from FeatureCount to DESeq2 - no duplicate for samples
DESeq2 FeatureCount
updated 3.4 years ago by ★ 5.0k • written 3.4 years ago by • 0
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1
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1.2k
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quantifying exom reads featureCount
ExomeSeq featureCount
4.2 years ago adR ▴ 40
4
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4
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2.5k
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Issues loading a BAM file resulted from featurecounts
featurecount rsubread GenomicAlignments
5.9 years ago Konstantinos Yeles ▴ 90
2
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6
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3.9k
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featureCount error - cannot identify gene_id
dexseq rsubread featureCount software error
updated 6.2 years ago by ▴ 450 • written 6.2 years ago by • 0
2
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1
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2.8k
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How to change stringtie gene_id names with ref_gene_id when performing featureCount
featureCount rna-seq gene_id re_gene_id stringtie
updated 7.0 years ago by ★ 3.6k • written 7.0 years ago by • 0
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Comment: soGGi error by shepherl 4.3k
We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…
Comment: using limma trend workflow in CAMERA by Gordon Smyth 53k
No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.
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Comment: using limma trend workflow in CAMERA by A.Barden ▴ 20
Do you need to set trend.var=TRUE when using camera in the limma-voom pipeline with RNA-Seq data (as apposed to limma-trend pipeline)?
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Answer: DiffBind differential analysis
Answer: Limma-voom sample weights and impact on DEG numbers
C: Why limma, edgeR, and DESeq did not implement fold change moderation first?
Comment: using limma trend workflow in CAMERA
C: z-score with DESeq2?
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