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featureCount
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0
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809
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Fatal error: Wrong thread calling 'RunFinalizers'
featureCount
Rsubread
HPC
2.1 years ago
kthapa
• 0
0
votes
2
replies
2.0k
views
output file conversion from FeatureCount to DESeq2 - no duplicate for samples
DESeq2
FeatureCount
updated 3.2 years ago by
ATpoint
★ 5.0k • written 3.2 years ago by
Jiayi
• 0
0
votes
1
reply
1.1k
views
quantifying exom reads featureCount
ExomeSeq
featureCount
4.0 years ago
adR
▴ 40
4
votes
4
replies
2.4k
views
Issues loading a BAM file resulted from featurecounts
featurecount
rsubread
GenomicAlignments
5.6 years ago
Konstantinos Yeles
▴ 90
2
votes
6
replies
3.7k
views
featureCount error - cannot identify gene_id
dexseq
rsubread
featureCount
software error
updated 5.9 years ago by
Yang Liao
▴ 450 • written 5.9 years ago by
seung.ho.steven.choi
• 0
2
votes
1
reply
2.7k
views
How to change stringtie gene_id names with ref_gene_id when performing featureCount
featureCount
rna-seq
gene_id
re_gene_id
stringtie
updated 6.8 years ago by
Wei Shi
★ 3.6k • written 6.8 years ago by
IRAIA.MAIALEN
• 0
6 results • Page
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Comment: "Watched Tags" are being erased rather than updated
by
shepherl
4.2k
I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112
Comment: "Watched Tags" are being erased rather than updated
by
shepherl
4.2k
we can investigate this issue. thank you for bringing it to our attention
Comment: deseq2 filter the low counts
by
Michael Love
43k
> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…
Comment: deseq2 filter the low counts
by
empty_mt
• 0
Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …
Comment: deseq2 filter the low counts
by
Michael Love
43k
Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering
Votes
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
Answer: Important: Bioconductor Release 3.22 Delayed
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