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fgsea
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3
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cant' download fgsea_1.20.0.tar.gz
download
fgsea
8 months ago
luca.s
▴ 50
1
vote
5
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301
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fgsea fork
fgsea
updated 27 days ago by
James W. MacDonald
65k • written 28 days ago by
yimjohns
• 0
0
votes
4
replies
134
views
FGSEA pre-ranked input in increasing order or decreasing
fgsea
7 days ago
sropri
• 0
0
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0
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599
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using fgsea to compare two datasets
GSEA
fgsea
9 months ago
Cen
• 0
0
votes
5
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454
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Help with DESeq results to pathways with the fgsea package
fgsea
rna
updated 10 weeks ago by
James W. MacDonald
65k • written 11 weeks ago by
Gordon
• 0
0
votes
0
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818
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fgsea/clusterProfiler Packages for nCounter data enrichment analysis
NanoStringDiff
clusterProfiler
fgsea
11 months ago
pg45863
▴ 10
0
votes
2
replies
328
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The order of those tied genes will be arbitrary, which may produce unexpected results.
fgsea
gsea
4 weeks ago • updated 23 days ago
Gordon
• 0
7 results • Page
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Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
ATpoint
★ 4.0k
I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…
Answer: Improving the design matrices vignette in RNAseq123
by
Gordon Smyth
50k
Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
• 0
Thank you for your comment! I'll review my code from top to bottom.
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;
Votes
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
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