Bioconductor Rna

Showing : rna • reset

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432

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RNA RNASeqPower DEGseq

written 6 months ago by Jonathan • 0

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751

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GEO rnaseqGene RNA

10 months ago • updated 9 months ago gallantk5 • 0

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1.5k

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fgsea rna

updated 15 months ago by James W. MacDonald 68k • written 15 months ago by Gordon • 0

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729

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RNA DESeq2

updated 16 months ago by Michael Love 43k • written 16 months ago by manuel • 0

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2.0k

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biomaRt ensembldb RNA ensembl

updated 2.1 years ago by Johannes Rainer ★ 2.1k • written 2.1 years ago by Christopher • 0

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3.2k

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Log2 edgeR RNA limma Normalization

2.5 years ago Sara • 0

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799

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RNASeq FeatureCounts Rna

2.6 years ago rridley3 • 0

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1.1k

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RNAseq ExperimentData RNAseq123 RNA ExperimentalDesign

updated 2.7 years ago by ATpoint ★ 4.8k • written 2.7 years ago by Mohamed ▴ 30

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MassSpectrometryData RNA DifferentialExpression

2.7 years ago António Miguel de Jesus Domingues ▴ 510

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1.1k

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RNA Alignment Rsubread

2.8 years ago • updated 2.7 years ago sreekalasn • 0

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1.5k

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RNAseq123 Rna

updated 2.9 years ago by Gordon Smyth 52k • written 2.9 years ago by Mikołaj Mierzejewski • 0

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2.3k

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RNA Combat sva R

3.0 years ago takemoto • 0

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1.1k

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methylation RNA native epitranscriptomics

updated 3.2 years ago by tcalvo ▴ 100 • written 3.2 years ago by megha.hs28 ▴ 10

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1.2k

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tximport rna rnaseqGene biomaRt

updated 3.4 years ago by ATpoint ★ 4.8k • written 3.4 years ago by st3472 • 0

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862

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RNA Normalization

4.1 years ago nancy • 0

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1.9k

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limma edgeR rna

4.1 years ago Nirad ▴ 10

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2.9k

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edgeR RNASeq

updated 4.5 years ago by Gordon Smyth 52k • written 4.5 years ago by weichengz ▴ 10

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3.3k

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annotation rna

updated 4.6 years ago by James W. MacDonald 68k • written 4.6 years ago by anthony.nash ▴ 20

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affy rna hta2.0 r

updated 5.0 years ago by James W. MacDonald 68k • written 5.0 years ago by Marco_aurelio • 0

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deseq2 RNA

updated 5.1 years ago by Michael Love 43k • written 5.1 years ago by agsousa • 0

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1.9k

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deseq2 RNA RNASeq

updated 5.2 years ago by Michael Love 43k • written 5.2 years ago by stephen.hartley • 0

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1.1k

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single cell RNA Data analysis Bioinformatics Job

5.9 years ago jmaanaki • 0

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1.8k

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RNA WGCNA filter

5.9 years ago modarzi ▴ 10

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1.2k

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RNA DESeq2

updated 6.1 years ago by Michael Love 43k • written 6.1 years ago by Merlin ▴ 10

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1.0k

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deseq2 RNA

updated 6.1 years ago by Michael Love 43k • written 6.1 years ago by Merlin ▴ 10

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rna singlecell limma

updated 6.1 years ago by Aaron Lun ★ 28k • written 6.1 years ago by Bioinformatician_R ▴ 20

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2.1k

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rna-seq rna

updated 6.1 years ago by Steve Lianoglou ★ 13k • written 6.1 years ago by Anthony Nash ▴ 20

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computational biology molecular biology RNA r-loop ncRNA Job

6.6 years ago l.brown ▴ 10

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1.3k

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r code rna wobble

7.3 years ago fawazfebin ▴ 60

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1.3k

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RNA rnaseq deseq2

updated 7.8 years ago by Michael Love 43k • written 7.8 years ago by Bioinformatician_R ▴ 20

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1.6k

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deseq2 RNA rnaseq

updated 7.8 years ago by Michael Love 43k • written 7.8 years ago by Bioinformatician_R ▴ 20

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2.3k

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outliers rna microarray

updated 8.0 years ago by chris86 ▴ 420 • written 8.0 years ago by bhgyu ▴ 30

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1.6k

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DGE rnaseq RNA edger

updated 8.0 years ago by londonflavido • 0 • written 8.0 years ago by Pietro ▴ 40

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2.3k

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RNA rna-seq science bioinformatics

updated 8.1 years ago by James W. MacDonald 68k • written 8.1 years ago by Bioinformatician_R ▴ 20

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4.7k

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RNA limma rsem edgeR

updated 8.1 years ago by Gordon Smyth 52k • written 8.1 years ago by Bioinformatician_R ▴ 20

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1.8k

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R bioconductor RNA mRNA RNA binding proteins

8.2 years ago Walter F. Baumann ▴ 10

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1.9k

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EdgeR deseq2 RNA differential expression

updated 8.7 years ago by Aaron Lun ★ 28k • written 8.7 years ago by tyssowski • 0

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5.4k

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RNA rnaseq Covariate adjustment deseq

updated 9.2 years ago by Michael Love 43k • written 9.2 years ago by sjs0282 • 0

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1.5k

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rna normalization

10.6 years ago aristotele_m ▴ 40

39 results • Page 1 of 1

Recent ...

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Comment: Check removeBatchEffect effectiveness by Gordon Smyth 52k

Both of your matrices, `design_batcheffects` and `design_timepoint`, span the intercept term, which will cause a warning about NA coefficie…

Comment: DiffBind - question on the use of filtered or unfiltered input data by sloperun3az • 0

Your essay was beneficial to me, and I found it to be very useful. Thank you for writing it. You give a wealth of knowledge that is not onl…

Comment: compute_fasta_digest does not match Salmon index hash by sloperun3az • 0

The people who are reading your work are not taken into consideration, even though you appear to have a solid understanding of the subject …

Comment: parameters of filterByExpr by Paul Harrison ▴ 110

It might be worth trying limma-voom (or limma-trend) instead of a GLM based method. In our experience these are less prone to this problem.…

Comment: limma::voom vs edgeR::voomLmFit - when to use? by Gordon Smyth 52k

voomLmFit() is in edgeR instead of limma because it needs to call edgeR::glmFit() internally to determine which of the zero observations al…

Votes

Comment: Check removeBatchEffect effectiveness

Answer: Check removeBatchEffect effectiveness

A: what should I do with many zero counts from Salmon quantification

Comment: parameters of filterByExpr

GAlignments Cigar to GRanges

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