Showing : rna • reset
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Cross-cultivar RNA-seq analysis
RNA Normalization
18 days ago • updated 16 days ago nancy • 0
0
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4
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133
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Fitting a continuous variable with batch effect using Limma. Also a question about normalization.
limma edgeR rna
29 days ago Nirad • 0
0
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3
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189
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Pearson correlation between gene expression and phenotype
edgeR RNASeq
updated 5 months ago by 42k • written 5 months ago by • 0
4
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3
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215
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How to resolve NAs when annotating a diff gene list with org.Hs.eg.db terms?
annotation rna
updated 6 months ago by 56k • written 7 months ago by ▴ 20
2
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7
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181
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Affycoretools package, HTA 2.0 annotation for non-coding RNA
affy rna hta2.0 r
updated 11 months ago by 56k • written 11 months ago by • 0
1
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1
reply
101
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How to interpret coefficients of time course modeled data with DESeq2?
deseq2 RNA
updated 12 months ago by 32k • written 12 months ago by • 0
0
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6
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123
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Bizarre Dispersion Plots
deseq2 RNA RNASeq
updated 14 months ago by 32k • written 14 months ago by • 0
0
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0
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224
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Job: Post-doctoral Fellowship at BC Cancer Research Center, Vancouver BC
single cell RNA Data analysis Bioinformatics Job
22 months ago jmaanaki • 0
1
vote
1
reply
236
views
how to filter genes in significant module?
RNA WGCNA filter
22 months ago modarzi ▴ 10
0
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2
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296
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DESeq and checkFullRank(modelMatrix)
RNA DESeq2
updated 2.1 years ago by 32k • written 2.1 years ago by ▴ 10
2
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1
reply
230
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DESeq2 statistic and design
deseq2 RNA
updated 2.1 years ago by 32k • written 2.1 years ago by ▴ 10
5
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5
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374
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Association analysis between gene expression and Phenotype
rna singlecell limma
updated 2.1 years ago by ★ 26k • written 2.1 years ago by ▴ 20
2
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3
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262
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Number and percent of mapped reads from RNA seq analysis.
rna-seq rna
updated 2.1 years ago by 13k • written 2.1 years ago by ▴ 20
1
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0
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349
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Job: 1 Computational Biologist and 1 Molecular Biologist
computational biology molecular biology RNA r-loop ncRNA Job
2.5 years ago l.brown ▴ 10
0
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0
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360
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R code for finding wobble/redundant positions in an RNA string
r code rna wobble
3.3 years ago fawazfebin ▴ 30
0
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1
reply
483
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Time series comparison with DESEQ2
RNA rnaseq deseq2
updated 3.7 years ago by 32k • written 3.7 years ago by ▴ 20
0
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1
reply
909
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RNA sequencing analysis for time point experiment using DeSeq2
deseq2 RNA rnaseq
updated 3.8 years ago by 32k • written 3.8 years ago by ▴ 20
1
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1
reply
554
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Outliers - to remove or to not remove that is the question
outliers rna microarray
updated 4.0 years ago by ▴ 390 • written 4.0 years ago by ▴ 30
5
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4
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647
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Experiment design contrasts any time edgeR
DGE rnaseq RNA edger
updated 4.0 years ago by • 0 • written 4.0 years ago by ▴ 30
3
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6
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949
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Regressing effect of treatment on RNA-seq expected count from rsem.
RNA rna-seq science bioinformatics
updated 4.1 years ago by 56k • written 4.1 years ago by ▴ 20
6
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5
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1.9k
views
Clustering differential expression results from voomWithQualityWeights
RNA limma rsem edgeR
updated 4.1 years ago by 42k • written 4.1 years ago by ▴ 20
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0
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719
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Finding candidate binding sites for RNA binding proteins in R
R bioconductor RNA mRNA RNA binding proteins
4.2 years ago Walter F. Baumann ▴ 10
3
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1
reply
845
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Targeted RNASeq/CaptureSeq DE Analysis
EdgeR deseq2 RNA differential expression
updated 4.7 years ago by ★ 26k • written 4.7 years ago by • 0
0
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4
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3.4k
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RNAseq Adjusting for Covariates?
RNA rnaseq Covariate adjustment deseq
updated 5.2 years ago by 32k • written 5.2 years ago by • 0
0
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2
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629
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Normalizzation indipentent data from RNAAeq experiment
rna normalization
6.6 years ago aristotele_m ▴ 30
25 results • Page 1 of 1
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Answer: Effect of feature number on adjusted p-values by Aaron Lun ★ 26k
> I assume this will have an impact on identifying significant gene regulation events, as p-value correction for multiple testing (both BH …
Answer: After having the output from SingleR for cell type annotation, what's the next s by Aaron Lun ★ 26k
**SingleR** is a well-behaved classification method in that each cell's assigned cell type is independent of the presence/behavior of other…
Comment: Effect of feature number on adjusted p-values by Gordon Smyth 42k
I agree with ATpoint. I also think your assumption is incorrect. Clusters with more expressed genes will generally have more DE genes at a …
Comment: Effect of feature number on adjusted p-values by ATpoint ▴ 630
Wouldn't a proper DE analysis have a single count matrix with all involved genes and samples (or cell type, clusters, or whatever you analy…
Comment: Cannot install packages by BiocManager::install() by James • 0
Thanks so much for posting this! Have been going crazy all afternoon trying to install a package!
Votes
Comment: How to download the ChAMP dependency ChAMPdata
Bioconductor Award for Outstanding Documentation
C: With DESeq2 "Not full rank" Error with design ~ line + time + condition
C: With DESeq2 "Not full rank" Error with design ~ line + time + condition
What does dba.PCA in DiffBind exactly do?
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Scholar to Aaron Lun ★ 26k
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Prophet to ijvechetti • 0
Scholar to James W. MacDonald 56k
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