Showing : rna • reset
0
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Ensembl dataset version
tximport rna rnaseqGene biomaRt
updated 11 days ago by ▴ 950 • written 11 days ago by • 0
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169
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Cross-cultivar RNA-seq analysis
RNA Normalization
8 months ago nancy • 0
0
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4
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394
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Fitting a continuous variable with batch effect using Limma. Also a question about normalization.
limma edgeR rna
9 months ago Nirad • 0
0
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3
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417
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Pearson correlation between gene expression and phenotype
edgeR RNASeq
updated 14 months ago by 44k • written 14 months ago by • 0
4
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3
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507
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How to resolve NAs when annotating a diff gene list with org.Hs.eg.db terms?
annotation rna
updated 15 months ago by 58k • written 15 months ago by ▴ 20
2
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7
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370
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Affycoretools package, HTA 2.0 annotation for non-coding RNA
affy rna hta2.0 r
updated 20 months ago by 58k • written 20 months ago by • 0
1
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1
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206
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How to interpret coefficients of time course modeled data with DESeq2?
deseq2 RNA
updated 20 months ago by 35k • written 20 months ago by • 0
0
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6
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282
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Bizarre Dispersion Plots
deseq2 RNA RNASeq
updated 22 months ago by 35k • written 22 months ago by • 0
0
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0
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340
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Job: Post-doctoral Fellowship at BC Cancer Research Center, Vancouver BC
single cell RNA Data analysis Bioinformatics Job
2.5 years ago jmaanaki • 0
1
vote
1
reply
400
views
how to filter genes in significant module?
RNA WGCNA filter
2.5 years ago modarzi ▴ 10
0
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2
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405
views
DESeq and checkFullRank(modelMatrix)
RNA DESeq2
updated 2.7 years ago by 35k • written 2.7 years ago by ▴ 10
2
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1
reply
308
views
DESeq2 statistic and design
deseq2 RNA
updated 2.8 years ago by 35k • written 2.8 years ago by ▴ 10
5
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5
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549
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Association analysis between gene expression and Phenotype
rna singlecell limma
updated 2.8 years ago by ★ 27k • written 2.8 years ago by ▴ 20
2
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3
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529
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Number and percent of mapped reads from RNA seq analysis.
rna-seq rna
updated 2.8 years ago by 13k • written 2.8 years ago by ▴ 20
1
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0
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448
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Job: 1 Computational Biologist and 1 Molecular Biologist
computational biology molecular biology RNA r-loop ncRNA Job
3.2 years ago l.brown ▴ 10
0
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0
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444
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R code for finding wobble/redundant positions in an RNA string
r code rna wobble
3.9 years ago fawazfebin ▴ 30
0
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1
reply
549
views
Time series comparison with DESEQ2
RNA rnaseq deseq2
updated 4.4 years ago by 35k • written 4.4 years ago by ▴ 20
0
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1
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987
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RNA sequencing analysis for time point experiment using DeSeq2
deseq2 RNA rnaseq
updated 4.5 years ago by 35k • written 4.5 years ago by ▴ 20
1
vote
1
reply
690
views
Outliers - to remove or to not remove that is the question
outliers rna microarray
updated 4.6 years ago by ▴ 390 • written 4.7 years ago by ▴ 30
5
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4
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770
views
Experiment design contrasts any time edgeR
DGE rnaseq RNA edger
updated 4.7 years ago by • 0 • written 4.7 years ago by ▴ 30
3
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6
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1.2k
views
Regressing effect of treatment on RNA-seq expected count from rsem.
RNA rna-seq science bioinformatics
updated 4.7 years ago by 58k • written 4.7 years ago by ▴ 20
6
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5
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2.2k
views
Clustering differential expression results from voomWithQualityWeights
RNA limma rsem edgeR
updated 4.8 years ago by 44k • written 4.8 years ago by ▴ 20
0
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0
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833
views
Finding candidate binding sites for RNA binding proteins in R
R bioconductor RNA mRNA RNA binding proteins
4.8 years ago Walter F. Baumann ▴ 10
3
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1
reply
1.0k
views
Targeted RNASeq/CaptureSeq DE Analysis
EdgeR deseq2 RNA differential expression
updated 5.3 years ago by ★ 27k • written 5.3 years ago by • 0
0
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4
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4.0k
views
RNAseq Adjusting for Covariates?
RNA rnaseq Covariate adjustment deseq
updated 5.9 years ago by 35k • written 5.9 years ago by • 0
0
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2
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727
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Normalizzation indipentent data from RNAAeq experiment
rna normalization
7.3 years ago aristotele_m ▴ 30
26 results • Page 1 of 1
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Comment: Cannot install Phyloseq and dada2 by Guido Hooiveld ★ 3.2k
Did you notice this message:? Installation paths not writeable, unable to update packages path: C:/Program Files/R/R-4.0.0/libra…
Comment: Use of shrunken LFCs to address questions about the distribution of LFCs between by i.sudbery ▴ 20
Thanks Mike. I might have a play with stratifying by expression level. One reason I wasn't looking at gene set testing is that its the nul…
Answer: submitting a BSgenome package by deisianyufg • 0
From my Github repository. I am sorry, I thought the package was already released and realize now that is still only in my github reposito…
Comment: PlotPCA in DESeq2 doesn't produce exactly the same result as prcomp by swbarnes2 ▴ 970
Is the one plot a mirror image of the other?
Answer: Use of shrunken LFCs to address questions about the distribution of LFCs between by Michael Love 35k
hi Ian, Great question, and good to be concerned that the mean expression may be a confounder for either analysis, Why not stratify your…
Votes
Answer: Use of shrunken LFCs to address questions about the distribution of LFCs between
Answer: DiffBind dba.count Error in if (sum(tokeep) < length(tokeep))
Comment: submitting a BSgenome package
Answer: rlog vs vst for outlier identification
Answer: DESeq2 median of ratios normalization for signature score calculation
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