Showing : rna • reset
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90
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Cross-cultivar RNA-seq analysis
RNA Normalization
3 months ago nancy • 0
0
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4
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232
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Fitting a continuous variable with batch effect using Limma. Also a question about normalization.
limma edgeR rna
3 months ago Nirad • 0
0
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3
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260
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Pearson correlation between gene expression and phenotype
edgeR RNASeq
updated 8 months ago by 43k • written 8 months ago by • 0
4
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3
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295
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How to resolve NAs when annotating a diff gene list with org.Hs.eg.db terms?
annotation rna
updated 9 months ago by 57k • written 9 months ago by ▴ 20
2
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7
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250
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Affycoretools package, HTA 2.0 annotation for non-coding RNA
affy rna hta2.0 r
updated 14 months ago by 57k • written 14 months ago by • 0
1
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1
reply
137
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How to interpret coefficients of time course modeled data with DESeq2?
deseq2 RNA
updated 15 months ago by 33k • written 15 months ago by • 0
0
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6
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182
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Bizarre Dispersion Plots
deseq2 RNA RNASeq
updated 17 months ago by 33k • written 17 months ago by • 0
0
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0
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264
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Job: Post-doctoral Fellowship at BC Cancer Research Center, Vancouver BC
single cell RNA Data analysis Bioinformatics Job
2.0 years ago jmaanaki • 0
1
vote
1
reply
294
views
how to filter genes in significant module?
RNA WGCNA filter
2.1 years ago modarzi ▴ 10
0
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2
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332
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DESeq and checkFullRank(modelMatrix)
RNA DESeq2
updated 2.3 years ago by 33k • written 2.3 years ago by ▴ 10
2
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1
reply
257
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DESeq2 statistic and design
deseq2 RNA
updated 2.3 years ago by 33k • written 2.3 years ago by ▴ 10
5
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5
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430
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Association analysis between gene expression and Phenotype
rna singlecell limma
updated 2.3 years ago by ★ 27k • written 2.3 years ago by ▴ 20
2
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3
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321
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Number and percent of mapped reads from RNA seq analysis.
rna-seq rna
updated 2.3 years ago by 13k • written 2.3 years ago by ▴ 20
1
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0
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380
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Job: 1 Computational Biologist and 1 Molecular Biologist
computational biology molecular biology RNA r-loop ncRNA Job
2.8 years ago l.brown ▴ 10
0
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0
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391
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R code for finding wobble/redundant positions in an RNA string
r code rna wobble
3.5 years ago fawazfebin ▴ 30
0
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1
reply
510
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Time series comparison with DESEQ2
RNA rnaseq deseq2
updated 3.9 years ago by 33k • written 3.9 years ago by ▴ 20
0
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1
reply
936
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RNA sequencing analysis for time point experiment using DeSeq2
deseq2 RNA rnaseq
updated 4.0 years ago by 33k • written 4.0 years ago by ▴ 20
1
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1
reply
616
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Outliers - to remove or to not remove that is the question
outliers rna microarray
updated 4.2 years ago by ▴ 390 • written 4.2 years ago by ▴ 30
5
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4
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686
views
Experiment design contrasts any time edgeR
DGE rnaseq RNA edger
updated 4.2 years ago by • 0 • written 4.2 years ago by ▴ 30
3
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6
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994
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Regressing effect of treatment on RNA-seq expected count from rsem.
RNA rna-seq science bioinformatics
updated 4.3 years ago by 57k • written 4.3 years ago by ▴ 20
6
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5
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2.0k
views
Clustering differential expression results from voomWithQualityWeights
RNA limma rsem edgeR
updated 4.3 years ago by 43k • written 4.3 years ago by ▴ 20
0
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0
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759
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Finding candidate binding sites for RNA binding proteins in R
R bioconductor RNA mRNA RNA binding proteins
4.4 years ago Walter F. Baumann ▴ 10
3
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1
reply
883
views
Targeted RNASeq/CaptureSeq DE Analysis
EdgeR deseq2 RNA differential expression
updated 4.9 years ago by ★ 27k • written 4.9 years ago by • 0
0
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4
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3.6k
views
RNAseq Adjusting for Covariates?
RNA rnaseq Covariate adjustment deseq
updated 5.4 years ago by 33k • written 5.4 years ago by • 0
0
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2
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664
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Normalizzation indipentent data from RNAAeq experiment
rna normalization
6.8 years ago aristotele_m ▴ 30
25 results • Page 1 of 1
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Comment: DESeq2 question: why I got discrepancy results for DEGs when using different way by Michael Love 33k
What is the correlation of the LFC for your two contrasts of mut vs wt in auto ganglia? Does the scatterplot of log2 fold changes look like…
Comment: DESeq2 question: why I got discrepancy results for DEGs when using different way by Ming ▴ 350
Thx for the advice about the reference levels, in which I did do as you suggested! In fact, I even tried more options just want to see why…
Answer: Time series DE gene analysis with edgeR where specific timepoints have NA levels by Gordon Smyth 43k
> is there a way to incorporate also the information of the additional samples that lack any of the aforementioned levels? NA values are n…
Comment: Time series DE gene analysis with edgeR where specific timepoints have NA levels by James W. MacDonald 57k
The `voomLmFit` function will automatically fit a linear mixed model accounting for within-subject correlations if you block on patient, so…
Comment: error in getBM (biomaRt): "error: no such table: metadata" by Mike Smith ★ 5.0k
Thanks for providing this solution. Anyone else encountering the issue can test if the cache is a problem by running `getBM()` with the ar…
Votes
tximeta error in fetching genome info
Answer: error in getBM (biomaRt): "error: no such table: metadata"
C: DESeq2 design formula: single control for multiple conditions [RIP-seq]
DESeq2 testing ratio of ratios (RIP-Seq, CLIP-Seq, ribosomal profiling)
Answer: cannot install edgeR on M1 Mac
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