Showing : rna • reset
0
votes
3
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217
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Trouble with creating Series RNA-seq normalized counts matrix
GEO rnaseqGene RNA
4 days ago • updated 3 days ago gallantk5 • 0
0
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5
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725
views
Help with DESeq results to pathways with the fgsea package
fgsea rna
updated 5 months ago by 66k • written 5 months ago by • 0
0
votes
1
reply
403
views
Running Deseq2 with all samples vs samples for each comparison separately
RNA DESeq2
updated 6 months ago by 42k • written 6 months ago by • 0
0
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2
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1.2k
views
Access Ensembl GRCH38 Version 87 Using BiomaRt
biomaRt ensembldb RNA ensembl
updated 15 months ago by ★ 2.1k • written 16 months ago by • 0
3
votes
6
replies
2.2k
views
Limma: log2 of TMM values for RNA-Seq Analysis and PlotMDS()?
Log2 edgeR RNA limma Normalization
20 months ago Sara • 0
0
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0
replies
587
views
Correct GFF3 translation for FeatureCounts
RNASeq FeatureCounts Rna
21 months ago rridley3 • 0
1
vote
1
reply
803
views
Confused about design for RNA seq experiment
RNAseq ExperimentData RNAseq123 RNA ExperimentalDesign
updated 22 months ago by ★ 4.2k • written 22 months ago by ▴ 30
0
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0
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845
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Job: Scientist/Senior Scientist – Bioinformatics / Computational Biology
MassSpectrometryData RNA DifferentialExpression
23 months ago António Miguel de Jesus Domingues ▴ 510
0
votes
2
replies
910
views
Rsubread align --R session aborts
RNA Alignment Rsubread
24 months ago • updated 23 months ago sreekalasn • 0
2
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1
reply
1.1k
views
Error in RNAseq123 analysis, unexpected symbol.
RNAseq123 Rna
updated 2.1 years ago by 51k • written 2.1 years ago by • 0
1
vote
2
replies
1.8k
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Is it necessary to standardize Combat in R?
RNA Combat sva R
2.2 years ago takemoto • 0
1
vote
1
reply
845
views
Description of the headers obtained from the Eligos2 output
methylation RNA native epitranscriptomics
updated 2.4 years ago by ▴ 90 • written 2.4 years ago by ▴ 10
0
votes
1
reply
941
views
Ensembl dataset version
tximport rna rnaseqGene biomaRt
updated 2.6 years ago by ★ 4.2k • written 2.6 years ago by • 0
0
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0
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679
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Cross-cultivar RNA-seq analysis
RNA Normalization
3.3 years ago nancy • 0
0
votes
4
replies
1.5k
views
Fitting a continuous variable with batch effect using Limma. Also a question about normalization.
limma edgeR rna
3.3 years ago Nirad ▴ 10
0
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3
replies
2.4k
views
Pearson correlation between gene expression and phenotype
edgeR RNASeq
updated 3.7 years ago by 51k • written 3.7 years ago by ▴ 10
4
votes
3
replies
2.5k
views
How to resolve NAs when annotating a diff gene list with org.Hs.eg.db terms?
annotation rna
updated 3.8 years ago by 66k • written 3.8 years ago by ▴ 20
2
votes
7
replies
1.3k
views
Affycoretools package, HTA 2.0 annotation for non-coding RNA
affy rna hta2.0 r
updated 4.2 years ago by 66k • written 4.2 years ago by • 0
1
vote
1
reply
856
views
How to interpret coefficients of time course modeled data with DESeq2?
deseq2 RNA
updated 4.2 years ago by 42k • written 4.2 years ago by • 0
0
votes
6
replies
1.4k
views
Bizarre Dispersion Plots
deseq2 RNA RNASeq
updated 4.4 years ago by 42k • written 4.4 years ago by • 0
0
votes
0
replies
867
views
Job: Post-doctoral Fellowship at BC Cancer Research Center, Vancouver BC
single cell RNA Data analysis Bioinformatics Job
5.0 years ago jmaanaki • 0
1
vote
1
reply
1.4k
views
how to filter genes in significant module?
RNA WGCNA filter
5.1 years ago modarzi ▴ 10
0
votes
2
replies
936
views
DESeq and checkFullRank(modelMatrix)
RNA DESeq2
updated 5.3 years ago by 42k • written 5.3 years ago by ▴ 10
2
votes
1
reply
870
views
DESeq2 statistic and design
deseq2 RNA
updated 5.3 years ago by 42k • written 5.3 years ago by ▴ 10
5
votes
5
replies
1.5k
views
Association analysis between gene expression and Phenotype
rna singlecell limma
updated 5.3 years ago by ★ 28k • written 5.3 years ago by ▴ 20
2
votes
3
replies
1.3k
views
Number and percent of mapped reads from RNA seq analysis.
rna-seq rna
updated 5.3 years ago by ★ 13k • written 5.3 years ago by ▴ 20
1
vote
0
replies
996
views
Job: 1 Computational Biologist and 1 Molecular Biologist
computational biology molecular biology RNA r-loop ncRNA Job
5.8 years ago l.brown ▴ 10
0
votes
0
replies
1.0k
views
R code for finding wobble/redundant positions in an RNA string
r code rna wobble
6.5 years ago fawazfebin ▴ 60
0
votes
1
reply
1.1k
views
Time series comparison with DESEQ2
RNA rnaseq deseq2
updated 6.9 years ago by 42k • written 6.9 years ago by ▴ 20
0
votes
1
reply
1.4k
views
RNA sequencing analysis for time point experiment using DeSeq2
deseq2 RNA rnaseq
updated 7.0 years ago by 42k • written 7.0 years ago by ▴ 20
1
vote
1
reply
1.5k
views
Outliers - to remove or to not remove that is the question
outliers rna microarray
updated 7.2 years ago by ▴ 420 • written 7.2 years ago by ▴ 30
5
votes
4
replies
1.4k
views
Experiment design contrasts any time edgeR
DGE rnaseq RNA edger
updated 7.2 years ago by • 0 • written 7.2 years ago by ▴ 40
3
votes
6
replies
2.0k
views
Regressing effect of treatment on RNA-seq expected count from rsem.
RNA rna-seq science bioinformatics
updated 7.3 years ago by 66k • written 7.3 years ago by ▴ 20
6
votes
5
replies
4.0k
views
Clustering differential expression results from voomWithQualityWeights
RNA limma rsem edgeR
updated 7.3 years ago by 51k • written 7.3 years ago by ▴ 20
0
votes
0
replies
1.5k
views
Finding candidate binding sites for RNA binding proteins in R
R bioconductor RNA mRNA RNA binding proteins
7.4 years ago Walter F. Baumann ▴ 10
3
votes
1
reply
1.7k
views
Targeted RNASeq/CaptureSeq DE Analysis
EdgeR deseq2 RNA differential expression
updated 7.9 years ago by ★ 28k • written 7.9 years ago by • 0
0
votes
4
replies
5.1k
views
RNAseq Adjusting for Covariates?
RNA rnaseq Covariate adjustment deseq
updated 8.4 years ago by 42k • written 8.4 years ago by • 0
0
votes
2
replies
1.3k
views
Normalizzation indipentent data from RNAAeq experiment
rna normalization
9.8 years ago aristotele_m ▴ 40
38 results • Page 1 of 1
Recent ...
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Comment: 'path' must be string by James W. MacDonald 66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string by cpierce2 • 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest by Robert • 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta by Guido Hooiveld ★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta by Michael Love 42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
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