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Question about extracting co-efficients for pairwise comparisons in edgeR
limma
fit
design
RNASeq
edgeR
21 months ago
Sabiha
▴ 20
1
vote
5
replies
3.5k
views
DESeq2: How to find out how well the model fits the data?
rnaseq
linear model
fit
deseq2
updated 8.6 years ago by
Michael Love
43k • written 8.6 years ago by
lina.faller
▴ 10
3
votes
2
replies
2.5k
views
DEXSeq throws a warning - rank-deficient matrix
dexseq
fit
matrix
warning
updated 4.1 years ago by
koushik
• 0 • written 8.9 years ago by
Assa Yeroslaviz
★ 1.5k
1
vote
7
replies
2.9k
views
Limma linear models
limma
goodness
fit
linear
model
updated 10.9 years ago by
Gordon Smyth
53k • written 10.9 years ago by
nonCodingGene
▴ 10
4 results • Page
1 of 1
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Answer: Question about RE-agnostic mode for intact Hi-C and Micro-C normalization(HiCDCP
by
victor04052024
• 0
You write quite well, and the content is very interesting. I'll provide you a link to my page [granny 2](https://granny2.io).
Answer: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink
by
victor04052024
• 0
The information is interesting, and your writing is excellent. I will provide you a link to my website [Baseball bros](https://baseball-gam…
Comment: segfault in edgeR glmQLFit
by
Gordon Smyth
53k
We have committed a bug fix now to edgeR on both the release and developmental Bioconductor repositories.
Answer: Ensembl site unresponsive via biomaRt
by
horaortiz8
• 0
I appreciate the link. I'll get in touch with them directly; I wish they had a status page of some kind. https://www.ensembl.org/Help/Cont…
Comment: segfault in edgeR glmQLFit
by
Mark
• 0
Thanks! We had been considering some of these adjustments as well, given the small number of features and total reads. Your advice is well-…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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