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Question about extracting co-efficients for pairwise comparisons in edgeR
limma
fit
design
RNASeq
edgeR
23 months ago
Sabiha
▴ 20
1
vote
5
replies
3.6k
views
DESeq2: How to find out how well the model fits the data?
rnaseq
linear model
fit
deseq2
updated 8.7 years ago by
Michael Love
43k • written 8.7 years ago by
lina.faller
▴ 10
3
votes
2
replies
2.6k
views
DEXSeq throws a warning - rank-deficient matrix
dexseq
fit
matrix
warning
updated 4.2 years ago by
koushik
• 0 • written 9.0 years ago by
Assa Yeroslaviz
★ 1.5k
1
vote
7
replies
3.0k
views
Limma linear models
limma
goodness
fit
linear
model
updated 11.0 years ago by
Gordon Smyth
53k • written 11.0 years ago by
nonCodingGene
▴ 10
4 results • Page
1 of 1
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Answer: Bulk RNAseq analysis for
by
Gordon Smyth
53k
All three packages allow paired comparisons, where the clone is the "pair". limma moreover allows mixed models (just run `voomLmFit` with `…
Comment: Announcing a New Journal - Bioinformatics Methods and Applications - Now Open fo
by
a2a2haa
• 0
By promoting reproducible analysis, the scientific community can better understand the precise mechanisms that make [Hydrogen inhalation sa…
Answer: Bulk RNAseq analysis for
by
James W. MacDonald
68k
In my experience, the within-clone variability of differentiated stem cells is often as large or larger than the between-clone variability,…
Comment: Jobs at Ensembl
by
frostybuddyy
• 0
I found your blog "Jobs at Ensembl" quite fascinating! The way you talked about the convergence of bioinformatics and data science in emplo…
Comment: Postdoctoral Fellow (Computational Biology / Bioinformatics) - Neuroepigenetics
by
mudasarnaeem2020
• 0
Promoting UDISE+ Features on Social Media to Increase Awareness https://udisseplus.com/[enter link description here][1] [1]: https://ud…
Votes
Comment: Are transformed values from rlog /vst log2 normalized counts?
Are transformed values from rlog /vst log2 normalized counts?
Answer: Bulk RNAseq analysis for
Answer: DiffBind differential analysis
Answer: Limma-voom sample weights and impact on DEG numbers
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