Bioconductor Flowmerge

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flowmerge

7.8 years ago adlerj • 0

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flowmerge

7.8 years ago adlerj • 0

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flowmerge MFI

updated 8.9 years ago by Greg Finak ▴ 240 • written 9.1 years ago by veronikag • 0

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flowMerge flowMerge

11.2 years ago oscar Jottrand ▴ 10

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flowMerge flowMerge

updated 12.1 years ago by Kevin Schiesser ▴ 10 • written 12.1 years ago by Kevin Schiesser ▴ 40

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Cancer flowMerge Cancer flowMerge

13.6 years ago Greg Finak ▴ 240

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Cancer flowMerge Cancer flowMerge

updated 13.6 years ago by Greg Finak ▴ 150 • written 13.6 years ago by Greg Finak ▴ 240

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Cancer flowMerge iFlow Cancer flowMerge iFlow

14.9 years ago Josef Spidlen ▴ 140

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flowMerge iFlow flowMerge iFlow

updated 14.9 years ago by Vincent J. Carey, Jr. 6.7k • written 14.9 years ago by Philipp Meng ▴ 20

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Comment: How do I fix an odd voom plot in a combined dataset? by 1sunmic2 • 0

Thanks for responding! I did change the code slightly: dge1 <- DGEList(counts = combined_data_counts) keep <- rowSums(cpm(dge1)…

Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis by Andre • 0

The estimateGLMRobustDisp() function seems to have an effect on glmQLFit(), even in edgeR 4 (4.4.1). If I use estimateGLMRobustDisp(), like…

Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis by Gordon Smyth 52k

Here, estimateGLMRobustDisp() was used just to get the diagnostic BCV plot by plotBCV(y). The robust NB dispersions were not used for the D…

Answer: Please, I desperately need help with DESeq2. Three groups of repeated measures w by Michael Love 43k

I have to reserve my time on the support site for software related questions. I recommend working with a local statistician or someone fami…

Answer: Is it possible to work with DESeq2 where data is not properly matched for sex a by Michael Love 43k

I would probably just do the M vs M analysis. You could instead include a term for sex and have a model with all 45 samples, but the M vs M…

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Answer: How do I fix an odd voom plot in a combined dataset?

Comment: How do I fix an odd voom plot in a combined dataset?

C: How does edgeR cpm function calculate log(CPM) values?

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