Bioconductor Fry

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5.6k

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limma DESeq2 fry edgeR

4 months ago bbao ▴ 10

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limma infinium fry

3.1 years ago mark.ziemann • 0

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2.6k

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roast fry limma

updated 6.4 years ago by Gordon Smyth 53k • written 6.4 years ago by kentfung ▴ 20

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limma mroast fry

updated 7.2 years ago by Gordon Smyth 53k • written 7.2 years ago by maltethodberg ▴ 180

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1.4k

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limma mroast fry

updated 7.3 years ago by Gordon Smyth 53k • written 7.3 years ago by siajunren • 0

5 results • Page 1 of 1

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Answer: problem reading bam files into nucleR by James W. MacDonald 68k

The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…

Answer: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k

It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …

Comment: problem reading bam files into nucleR by efoss ▴ 10

I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…

Answer: two questions about limma by Gordon Smyth 53k

Answered here: https://support.bioconductor.org/p/16318/

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0

Thank you very much! will take that into consideration

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Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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Commentator to sina.nassiri ▴ 130