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fry
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Can fry() be used on infinium methylation array data to call differential methylation?
limma
infinium
fry
2.4 years ago
mark.ziemann
• 0
2
votes
2
replies
2.1k
views
Finding genes in a gene set detected by ROAST (or FRY) in limma
roast
fry
limma
updated 5.6 years ago by
Gordon Smyth
52k • written 5.6 years ago by
kentfung
▴ 20
0
votes
2
replies
1.1k
views
mroast/fry with gene weights for most or all genes
limma
mroast
fry
updated 6.4 years ago by
Gordon Smyth
52k • written 6.5 years ago by
maltethodberg
▴ 180
3
votes
3
replies
1.2k
views
Conditions for using Fry
limma
mroast
fry
updated 6.6 years ago by
Gordon Smyth
52k • written 6.6 years ago by
siajunren
• 0
4 results • Page
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Answer: How to adjust for Cell Type Differences between groups in Pseudo-Bulk Differenti
by
James W. MacDonald
68k
The short answer is yes. When you compute pseudo-bulk estimates, the counts/gene are expected to be somewhat proportional to the number of …
Comment: displaying the differential expression with deseq2 over 4X2 samples with the in
by
Leonard
• 0
Visualize subject contributions to overall differential expression using: Volcano plots/scatter plots (subject-colored). Heatmaps (subject…
Comment: Plot title for PCA in DESeq2
by
AL
• 0
Thank you!
Answer: Interpreting DESEQ2 interaction term and inclusion of covariate
by
swbarnes2
★ 1.4k
"ecotypehigh.rearing_high" will basically do a 4 group comparison, and tell you if any genes that change going from high to low change diff…
Comment: error in ChAMP loading file
by
Ashley
• 0
This error in ChAMP loading file and the solutions provided here are good and there are people who need these solutions. To get the [Rockin…
Votes
Interpreting DESEQ2 interaction term and inclusion of covariate
A: Seurat/DESeq2 - single cell RNA-seq differential expression
Answer: Plot title for PCA in DESeq2
A: DESeq2: detect significantly increasing across an ordinal variable
Answer: DEseq2 design for additive treatment
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