Bioconductor Genemeta

Showing : genemeta • reset

votes

replies

2.0k

views

preprocessing microarray genemeta

updated 8.4 years ago by alexvpickering ▴ 110 • written 8.4 years ago by Lian Liu ▴ 20

votes

replies

1.8k

views

RankProd GeneMeta metaArray RankProd GeneMeta metaArray

13.6 years ago boczniak767 ▴ 740

votes

replies

1.8k

views

rae230a affy GeneMeta rae230a affy GeneMeta

updated 18.8 years ago by Darlene Goldstein ▴ 230 • written 18.8 years ago by Sharon Anbu ▴ 480

votes

replies

1.2k

views

Microarray limma GeneMeta Microarray limma GeneMeta

14.9 years ago Paul Leo ▴ 970

votes

replies

1.1k

views

GeneMeta GeneMeta

14.4 years ago Seungwoo Hwang ▴ 80

votes

replies

943

views

GeneMeta GeneMeta

19.7 years ago ivan.borozan@utoronto.ca ▴ 80

votes

replies

458

views

GeneMeta generegulation

2.5 years ago Marcus • 0

7 results • Page 1 of 1

Recent ...

Replies

Comment: Annotation package for Manduca sexta by GA ▴ 10

Thank you!

Comment: Improving performance of edgeR and limma while adjusting for multiple confounder by ATpoint ★ 4.8k

If 2 minutes is inacceptable to you then you can still fall back to limma-trend which should give a dramatic speedup and finish in seconds.…

Comment: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Mike Smith ★ 6.6k

Great, thanks for the update from Ensembl. So the most relevant part of 'Location: Scaffold HG1277_PATCH: 137,021-141,806 forward strand' …

Answer: Improving performance of edgeR and limma while adjusting for multiple confounder by Gordon Smyth 52k

We recommend that you use voomLmFit() instead of voom+lmFit. We are pretty proud of the speed of glmQLFit and voom, and we hadn't expected…

Answer: Merging EPICV1 and V2 betas by James W. MacDonald 68k

It appears that [SeSAMe][1] has functions meant to do that sort of thing. [1]: https://bioconductor.org/packages/release/bioc/vignet…

Votes

Looking for equivalent EPIC chip v1 vs. v2 annotation variables

Properly constructing a hypergeometric test

A: Is logFC a log2 fold change or some other base in scran::findMarkers

Comment: Error in retrieving clinical data

What is the cheapest day to fly on American Airlines? {Ask_Expert}

Awards • All