Bioconductor Genome annotation

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genome annotation drosophila melanogaster org.Mm.eg.db

updated 9.5 years ago by Marc Carlson ★ 7.2k • written 9.5 years ago by Patrick Schorderet ▴ 20

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ucsc gene set analysis genome annotation

updated 9.4 years ago by James W. MacDonald 67k • written 9.4 years ago by n_bormann1 • 0

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Answer: rtracklayer accessing UCSC data table not working by James W. MacDonald 67k

The track argument is deprecated now, so you can omit it. ``` > tbl.rmsk <- getTable(ucscTableQuery(mySession, table = "rmsk", range = …

Answer: For feline genome by James W. MacDonald 67k

This support site is meant to help people with specific questions about using Bioconductor software. There is a [vignette for `ROntoTools`]…

Comment: DESeq2 with proteomics data by Michael Love 42k

I would guess the distribution isn't correct. Anyway I agree it's not a good idea to supply non-sequencing data to a method designed for se…

Answer: Many DEGs (Is a high percentage of DEGs acceptable in DESeq2)? by Michael Love 42k

Let me copy over my answers from GitHub 1. this is not a violation of the size factor calculation. check `plotPCA`, likely the groups a…

Answer: Rstudio died when put more than three letters in subseting a SummarizedExperime by Shuo GG • 0

The problem is solved. It's because Rstudio try to autocomplete or suggest objects from the environment, even though I don't understand why…

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Answer: unable to access Annotationhub latest record

Answer: Inconsistent result in edgeR

A: MBDseq analysis using qsea package

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