Showing : genomicscores • reset
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How to get The evolutionary conservation scores for lncRNAs by the phastCons100way.UCSC.hg38 (3.7.1) R package
txdbmaker GenomicScores phastCons100way.UCSC.hg38 GenomicFeatures
11 months ago rania.alanany • 0
2
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5
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1.8k
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MafH5.gnomAD.v3.1.2.GRCh38 omitted indels
GenomicScores
updated 3.1 years ago by ★ 3.4k • written 3.3 years ago by • 0
3
votes
15
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3.6k
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subpopulations available in MafH5.gnomAD.v3.1.1.GRCh38
GenomicScores MafH5.gnomAD.v3.1.1.GRCh38
updated 3.4 years ago by ★ 3.4k • written 3.6 years ago by • 0
0
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6
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2.1k
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GenomicScores package: availableGScores and getGScores functions not working
GenomicScores
updated 4.1 years ago by ★ 3.4k • written 4.1 years ago by ▴ 20
7
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16
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5.0k
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How to extract phastcons score for all protein coding genes and lncRNAs using GenomicScores?
genomicscores granges phastCons100way.UCSC.hg38 r rtracklayer
updated 11 months ago by • 0 • written 5.6 years ago by ▴ 120
5 results • Page 1 of 1
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Comment: Issues with downloading biomaRt - SeqInfo and S4 Vectors by James W. MacDonald 68k
Note that `S4Vectors` contains source code, so you will also need to [install RTools first][1]. [1]: https://cran.r-project.org/bin/win…
Answer: Issues with downloading biomaRt - SeqInfo and S4 Vectors by shepherl 4.2k
Our windows binaries are currently lagging behind as we are currently do not have a windows builder. If you are on windows you can try ins…
Comment: Issues with downloading biomaRt - SeqInfo and S4 Vectors by shepherl 4.2k
Can you please provide your `sessionInfo()` after doing `library("S4Vectors")`
Comment: VariantAnnotation does escape = within header string quotes by Daniel Cameron ▴ 40
I'm just stripping the entire line as a workaround using `meta(header(vcf))$DRAGENCommandLine = NULL`. Not ideal but at least subsequent pa…
Comment: Setting up a DESeq2 Design with Paired Data by Alexander • 0
Hi Kevin, Firstly, thank you so much for not only a very prompt response, but one that is incredibly insightful and helps me learn DESeq2 …
Votes
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
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Scholar to James W. MacDonald 68k
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