updated 5.6 years ago by
James W. MacDonald
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written 5.6 years ago by
Robert Castelo
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Comment: DESeq2 - understanding intercept and contrasts
by
sarah-spie
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Thank you, dear Michael, and thank you for being so active in this forum in general!
Could you have a look at this line, in which I wand to…
Answer: tximeta countsFromAbundance for downstream analysis
by
Michael Love
33k
The counts will not be closely correlated to the TPM across genes, because the gene length is included in the gene count but not in the TPM…
Answer: DESeq2 - understanding intercept and contrasts
by
Michael Love
33k
For questions on setting up the statistical design and contrasts, I recommend to consult with a local statistician or someone familiar with…
Answer: Interaction terms and selection of coef in normal and shrunk results
by
Michael Love
33k
Please see the diagram in the vignette on interactions, but for further questions on setting up the design, I recommend to consult with a l…
Answer: about baseMean in DEseq2
by
Michael Love
33k
More information about the columns is here:
https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#access-…
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