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pd.hta.2.0
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0
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2
replies
1.4k
views
pd.hta.2.0 not installed with Bioconductor 3.5 BiocInstaller 1.26.0 R 3.4.1
package installation
pd.hta.2.0
6.1 years ago
alexander2073
• 0
0
votes
2
replies
1.7k
views
Reading CEL files using Oligo and pd.hta.2.0 packages in Windows 7
oligo
pd.hta.2.0
CEL
R
windows 7
6.1 years ago
ladhikari
• 0
2
votes
3
replies
1.3k
views
Filtering of lowly expressed probes in HTA 2.0 using new pd.hta.2.0 version 3.12.2
pd.hta.2.0
hta2.0
affycoretools
updated 6.1 years ago by
James W. MacDonald
63k • written 6.1 years ago by
relathman
▴ 20
2
votes
13
replies
2.6k
views
problems filtering antigenomic probes from HTA 2.0
pd.hta.2.0
R
7.1 years ago • updated 6.6 years ago
s.munster
▴ 40
5
votes
9
replies
5.1k
views
Pre-processing of HTA 2.0 array
pd.hta.2.0
updated 6.9 years ago by
James W. MacDonald
63k • written 6.9 years ago by
pbachali
▴ 50
3
votes
5
replies
2.0k
views
Fail to install "AnnotationHub"
software error
annotation
genefilter
pd.hta.2.0
updated 7.0 years ago by
Martin Morgan
25k • written 7.0 years ago by
Lian Liu
▴ 20
0
votes
5
replies
1.0k
views
pd.hta.2.0 oddity, possible RSQLite bug?
oligo
rsqlite
pd.hta.2.0
updated 7.0 years ago by
James W. MacDonald
63k • written 7.0 years ago by
Vincent J. Carey, Jr.
6.7k
9
votes
2
replies
2.0k
views
How to deal with Affymetrix GeneChip probeids that map to multiple genes
hta20sttranscriptcluster.db
probe mapping
annotation
pd.hta.2.0
annotationdbi
updated 7.0 years ago by
James W. MacDonald
63k • written 7.0 years ago by
relathman
▴ 20
3
votes
3
replies
1.2k
views
Trouble annotating HTA microarray
hta
pd.hta.2.0
hta20sttranscriptcluster.db
updated 7.2 years ago by
James W. MacDonald
63k • written 7.2 years ago by
giroudpaul
▴ 40
3
votes
3
replies
2.3k
views
Problem using RMA Method in 'Oligo' with HTAFeatureset Objects
affymetrix microarrays
microarray
pd.hta.2.0
oligo
rma
updated 7.5 years ago by
James W. MacDonald
63k • written 7.5 years ago by
jennifer.drake
• 0
7
votes
16
replies
2.1k
views
Can "Glue Grant" arrays be processed with pd.hta.2.0?
pd.hta.2.0
ggh3
oligo
glue grant
updated 7.8 years ago by
James W. MacDonald
63k • written 7.8 years ago by
Robert Castelo
★ 3.0k
0
votes
1
reply
1.4k
views
HTA analysis at transcript level
pd.hta.2.0
transcript
differential gene expression
updated 7.9 years ago by
James W. MacDonald
63k • written 7.9 years ago by
jacorvar
▴ 40
1
vote
0
replies
2.1k
views
The current annotation for Affymetrix HTA 2.0 array is problematic
oligo
pdInfoBuilder
pd.hta.2.0
8.2 years ago
tangboyun
▴ 30
13 results • Page
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Comment: biomaRt code/getBM function no longer importing 'coding' sequence via seqType ar
by
James W. MacDonald
63k
I should also point out that you can find this out by yourself by going to [ensembl][1], clicking on the Biomart link, and then scrolling t…
Answer: biomaRt code/getBM function no longer importing 'coding' sequence via seqType ar
by
James W. MacDonald
63k
It's my understanding that the archived Biomart data are not complete, which is likely why you cannot get sequences. But you apparently jus…
Comment: ComBat_seq function in sva package does not return a matrix
by
Federico
▴ 10
Thanks for your help, problem solved :)
Answer: ComBat_seq function in sva package does not return a matrix
by
ATpoint
★ 3.4k
That happens if your `x` is a data.frame rather than a matrix. It is listed under the Q&A section in https://github.com/zhangyuqing/ComBat-…
Answer: error running exp2grn
by
Fabricio Almeida-Silva
▴ 40
Hi, Adriana. It seems like the gene IDs you specified in `Host13tfs$Protein.ID` do not match any gene IDs in the row names of your expr…
Votes
ComBat_seq function in sva package does not return a matrix
Answer: ComBat_seq function in sva package does not return a matrix
Answer: ComBat_seq function in sva package does not return a matrix
Answer: ComBat_seq function in sva package does not return a matrix
Answer: ComBat_seq function in sva package does not return a matrix
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