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pd.hta.2.0
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0
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2
replies
1.5k
views
pd.hta.2.0 not installed with Bioconductor 3.5 BiocInstaller 1.26.0 R 3.4.1
package installation
pd.hta.2.0
6.6 years ago
alexander2073
• 0
0
votes
2
replies
1.9k
views
Reading CEL files using Oligo and pd.hta.2.0 packages in Windows 7
oligo
pd.hta.2.0
CEL
R
windows 7
6.6 years ago
ladhikari
• 0
2
votes
3
replies
1.4k
views
Filtering of lowly expressed probes in HTA 2.0 using new pd.hta.2.0 version 3.12.2
pd.hta.2.0
hta2.0
affycoretools
updated 6.6 years ago by
James W. MacDonald
65k • written 6.6 years ago by
relathman
▴ 20
2
votes
13
replies
3.0k
views
problems filtering antigenomic probes from HTA 2.0
pd.hta.2.0
R
7.6 years ago • updated 7.1 years ago
s.munster
▴ 40
5
votes
9
replies
5.5k
views
Pre-processing of HTA 2.0 array
pd.hta.2.0
updated 7.4 years ago by
James W. MacDonald
65k • written 7.4 years ago by
pbachali
▴ 50
3
votes
5
replies
2.2k
views
Fail to install "AnnotationHub"
software error
annotation
genefilter
pd.hta.2.0
updated 7.5 years ago by
Martin Morgan
25k • written 7.5 years ago by
Lian Liu
▴ 20
0
votes
5
replies
1.1k
views
pd.hta.2.0 oddity, possible RSQLite bug?
oligo
rsqlite
pd.hta.2.0
updated 7.5 years ago by
James W. MacDonald
65k • written 7.5 years ago by
Vincent J. Carey, Jr.
6.7k
9
votes
2
replies
2.3k
views
How to deal with Affymetrix GeneChip probeids that map to multiple genes
hta20sttranscriptcluster.db
probe mapping
annotation
pd.hta.2.0
annotationdbi
updated 7.5 years ago by
James W. MacDonald
65k • written 7.5 years ago by
relathman
▴ 20
3
votes
3
replies
1.3k
views
Trouble annotating HTA microarray
hta
pd.hta.2.0
hta20sttranscriptcluster.db
updated 7.7 years ago by
James W. MacDonald
65k • written 7.7 years ago by
giroudpaul
▴ 40
3
votes
3
replies
2.6k
views
Problem using RMA Method in 'Oligo' with HTAFeatureset Objects
affymetrix microarrays
microarray
pd.hta.2.0
oligo
rma
updated 8.0 years ago by
James W. MacDonald
65k • written 8.0 years ago by
jennifer.drake
• 0
7
votes
16
replies
2.3k
views
Can "Glue Grant" arrays be processed with pd.hta.2.0?
pd.hta.2.0
ggh3
oligo
glue grant
updated 8.2 years ago by
James W. MacDonald
65k • written 8.2 years ago by
Robert Castelo
★ 3.1k
0
votes
1
reply
1.5k
views
HTA analysis at transcript level
pd.hta.2.0
transcript
differential gene expression
updated 8.4 years ago by
James W. MacDonald
65k • written 8.4 years ago by
jacorvar
▴ 40
1
vote
0
replies
2.2k
views
The current annotation for Affymetrix HTA 2.0 array is problematic
oligo
pdInfoBuilder
pd.hta.2.0
8.7 years ago
tangboyun
▴ 30
13 results • Page
1 of 1
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Answer: maftools: Error in validateMaf(maf = maf, isTCGA = isTCGA, rdup = removeDuplicat
by
snijesh
▴ 20
You can try: using `read.delim` or `fread`. ``` my_maf = data.table::fread("path/to/maf/sample.maf") my_maf = read.maf(maf = my_maf) …
Comment: DEG Filtering
by
Amit
• 0
Hi Gordon, Thank you for your response and advice. I want to analyze Dataset GSE18090 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi) whic…
Comment: edgeR, 3 x 2 design with a batch effect and contrasts
by
Gordon Smyth
50k
Yes, that is a quote from [A guide to creating design matrices for gene expression experiments](https://bioconductor.org/packages/release/w…
Comment: edgeR, 3 x 2 design with a batch effect and contrasts
by
JKim
• 0
Thank you. I think I found why the order matters. > Although an intercept-free design matrix has been coded using the 0+ notation, the in…
Comment: Unable to annotate ExpressionSet object from hugene11st chip
by
Efra
• 0
I did as you told, and after running ```eset.annot <- annotateEset(eset, hugene11sttranscriptcluster.db)``` I got the next output: ``` 'se…
Votes
C: How to check that the reads in two fastq files are in the same order
Answer: edgeR, 3 x 2 design with a batch effect and contrasts
Answer: Need help with creating and plotting temporal clustering analysis of DEGs
Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
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