Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
pd.hta.2.0
•
reset
0
votes
2
replies
1.8k
views
pd.hta.2.0 not installed with Bioconductor 3.5 BiocInstaller 1.26.0 R 3.4.1
package installation
pd.hta.2.0
7.7 years ago
alexander2073
• 0
0
votes
2
replies
2.3k
views
Reading CEL files using Oligo and pd.hta.2.0 packages in Windows 7
oligo
pd.hta.2.0
CEL
R
windows 7
7.7 years ago
ladhikari
• 0
2
votes
3
replies
1.8k
views
Filtering of lowly expressed probes in HTA 2.0 using new pd.hta.2.0 version 3.12.2
pd.hta.2.0
hta2.0
affycoretools
updated 7.7 years ago by
James W. MacDonald
68k • written 7.7 years ago by
relathman
▴ 20
2
votes
13
replies
3.8k
views
problems filtering antigenomic probes from HTA 2.0
pd.hta.2.0
R
8.7 years ago • updated 8.2 years ago
s.munster
▴ 40
5
votes
9
replies
6.5k
views
Pre-processing of HTA 2.0 array
pd.hta.2.0
updated 8.5 years ago by
James W. MacDonald
68k • written 8.5 years ago by
pbachali
▴ 50
3
votes
5
replies
2.8k
views
Fail to install "AnnotationHub"
software error
annotation
genefilter
pd.hta.2.0
updated 8.6 years ago by
Martin Morgan
25k • written 8.6 years ago by
Lian Liu
▴ 20
0
votes
5
replies
1.4k
views
pd.hta.2.0 oddity, possible RSQLite bug?
oligo
rsqlite
pd.hta.2.0
updated 8.6 years ago by
James W. MacDonald
68k • written 8.6 years ago by
Vincent J. Carey, Jr.
6.7k
9
votes
2
replies
3.2k
views
How to deal with Affymetrix GeneChip probeids that map to multiple genes
hta20sttranscriptcluster.db
probe mapping
annotation
pd.hta.2.0
annotationdbi
updated 8.6 years ago by
James W. MacDonald
68k • written 8.6 years ago by
relathman
▴ 20
3
votes
3
replies
1.6k
views
Trouble annotating HTA microarray
hta
pd.hta.2.0
hta20sttranscriptcluster.db
updated 8.8 years ago by
James W. MacDonald
68k • written 8.8 years ago by
giroudpaul
▴ 40
3
votes
3
replies
3.1k
views
Problem using RMA Method in 'Oligo' with HTAFeatureset Objects
affymetrix microarrays
microarray
pd.hta.2.0
oligo
rma
updated 9.1 years ago by
James W. MacDonald
68k • written 9.1 years ago by
jennifer.drake
• 0
7
votes
16
replies
3.0k
views
Can "Glue Grant" arrays be processed with pd.hta.2.0?
pd.hta.2.0
ggh3
oligo
glue grant
updated 9.4 years ago by
James W. MacDonald
68k • written 9.4 years ago by
Robert Castelo
★ 3.4k
0
votes
1
reply
1.7k
views
HTA analysis at transcript level
pd.hta.2.0
transcript
differential gene expression
updated 9.5 years ago by
James W. MacDonald
68k • written 9.5 years ago by
jacorvar
▴ 40
1
vote
0
replies
2.5k
views
The current annotation for Affymetrix HTA 2.0 array is problematic
oligo
pdInfoBuilder
pd.hta.2.0
9.8 years ago
tangboyun
▴ 30
13 results • Page
1 of 1
Recent ...
Replies
Comment: Cannot extract size factor from DESeq2 analysis
by
s.malik
• 0
Dear Mike, using tximeta and following code, is this fine to extract normalized counts after `sizeFactors(dds)` gives NULL? `dds <- DESeq…
Comment: Design formula for circadian time-course data for vst() function
by
Vishnu
• 0
Thank you so much for your reply.
Comment: Analyzing TnSeq data with DESeq2
by
Tom
• 0
[Doncaster Locksmith][1] delivers trusted, efficient security services tailored to your needs. Analyzing TnSeq data with DESeq2 may uncover…
Answer: Design formula for circadian time-course data for vst() function
by
ATpoint
★ 4.8k
This was asked before: https://support.bioconductor.org/p/9148734/#9148812 Take-home message is that influence is minor, as you see your…
Comment: Filtering after DESeq
by
caroline.zanchi
• 0
... I did it. It does filter out quite a bit of genes : ``` keep <- filterByExpr(dds, group="host_treatment_generation",min.count = 10, mi…
Votes
Comment: Filtering after DESeq
A: Normalized counts from DESeq2 results in similar but not equal total read count?
A: DESeq2: Different Dispersions for different sample groups
A: Contrasts & coefficients in limma
Answer: How to formulate 2 factor nested design in DESeq2
Awards
• All
Popular Question
to
Sam
▴ 10
Popular Question
to
s.malik
• 0
Popular Question
to
shepherl
4.1k
Popular Question
to
Dario Strbenac
★ 1.6k
Popular Question
to
etiennedanis
• 0
Locations
• All
United Kingdom,
3 minutes ago
Jerusalem,
36 minutes ago
WEHI, Melbourne, Australia,
1 hour ago
Greece,
1 hour ago
Pakistan,
2 hours ago
Traffic: 831 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6