Bioconductor Ggplot

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21k

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edger ggplot

updated 6.6 years ago by Aaron Lun ★ 28k • written 6.6 years ago by mictadlo ▴ 10

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1.8k

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ggplot

2.4 years ago nattzy94 ▴ 20

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1.8k

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edger ggplot

updated 6.6 years ago by Gordon Smyth 50k • written 6.6 years ago by mictadlo ▴ 10

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1.5k

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ggplot2 ggplot plot

updated 8.3 years ago by James W. MacDonald 65k • written 8.3 years ago by alptaciroglu ▴ 50

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725

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ggplot

updated 13 months ago by Konstantinos Yeles ▴ 80 • written 13 months ago by R_diot • 0

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656

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ggplot2 ggplot cmplot

5.1 years ago gens8094 • 0

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645

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ggplot cmplot ggplot2

5.1 years ago gens8094 • 0

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573

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TCseq ggplot

23 months ago jochen • 0

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558

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ggplot

updated 3.0 years ago by Kevin Blighe ★ 3.9k • written 3.0 years ago by abhisek001 • 0

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430

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ggplot dendogram ggtreeExtra clustree ggtree

13 months ago christian.dina • 0

10 results • Page 1 of 1

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Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k

Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k

I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …

Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k

This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…

Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0

Thank you Tim, this is a great help in getting me started!

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Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-

Answer: limma Intercept vs No-intercept models completely changing DMR results?

Answer: CombineArrays for EPIC and EPIC V2

Answer: Too many significant genes when integrating gtex and tcga

Comment: Too many significant genes when integrating gtex and tcga

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