Bioconductor Ggplot

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22k

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edger ggplot

updated 7.2 years ago by Aaron Lun ★ 28k • written 7.2 years ago by mictadlo ▴ 10

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2.2k

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ggplot

3.0 years ago nattzy94 ▴ 20

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2.0k

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edger ggplot

updated 7.2 years ago by Gordon Smyth 52k • written 7.2 years ago by mictadlo ▴ 10

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1.7k

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ggplot2 ggplot plot

updated 8.9 years ago by James W. MacDonald 67k • written 8.9 years ago by alptaciroglu ▴ 50

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1.2k

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DESeq2 ggplot PCA

written 4 months ago by robledoj13 • 0

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1.0k

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ggplot

updated 20 months ago by Konstantinos Yeles ▴ 80 • written 20 months ago by R_diot • 0

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807

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ggplot2 ggplot cmplot

5.7 years ago gens8094 • 0

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790

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ggplot cmplot ggplot2

5.7 years ago gens8094 • 0

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745

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ggplot

updated 3.6 years ago by Kevin Blighe ★ 4.0k • written 3.6 years ago by abhisek001 • 0

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732

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TCseq ggplot

2.5 years ago jochen • 0

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640

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ggplot dendogram ggtreeExtra clustree ggtree

20 months ago christian.dina • 0

11 results • Page 1 of 1

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Comment: Differential Expression Genes as Independent Variables by Dario Strbenac ★ 1.5k

Also, the reason why gene abundance is the dependent variable and is iterated over is that there are far more genes than there are samples …

Comment: rrvgo::calculateSimMatrix() error by Phila • 0

Thanks for sharing the solution. It helps me. [nced cloud][1] [1]: https://my-ncedcloud-login.us/

Comment: Merge Replicates vs Mixed Model by gabriel.hoffman ▴ 170

For your proteomics data, your normalization is correct. I had assumed it was RNA-seq because that is what I think about most. When using…

Comment: What type of counts data to import for performing Isoform analysis in edgeR by mohammedtoufiq91 ▴ 10

@gordonsmyth I will re-run Salmon with the --numGibbsSamples=50 option. Thank you.

Comment: Differential Expression Genes as Independent Variables by Gordon Smyth 52k

Such an analysis cannot be done in limma. Sorry, I cannot tell you how to do it or even whether it is possible.

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Comment: What type of counts data to import for performing Isoform analysis in edgeR

Answer: What type of counts data to import for performing Isoform analysis in edgeR

Transcript-level differential expression using DESeq2

Comment: What type of counts data to import for performing Isoform analysis in edgeR

Answer: What type of counts data to import for performing Isoform analysis in edgeR

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