Bioconductor Ggtools

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1.2k

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GGtools GGtools

updated 11.0 years ago by Vincent J. Carey, Jr. 6.7k • written 11.0 years ago by Fabrice Tourre ▴ 970

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1.8k

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SNP Annotation probe SNPlocs GGtools SNP Annotation probe SNPlocs GGtools

updated 12.5 years ago by Vincent J. Carey, Jr. 6.7k • written 12.5 years ago by Guest User ★ 13k

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1.7k

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SNP convert GGtools snpMatrix SNP convert GGtools snpMatrix

updated 13.8 years ago by Vincent J. Carey, Jr. 6.7k • written 13.8 years ago by Mao Jianfeng ▴ 290

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1.1k

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SNP GGtools SNP GGtools

updated 14.0 years ago by Vincent J. Carey, Jr. 6.7k • written 14.0 years ago by Richard Pearson ▴ 160

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1.7k

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Infrastructure GUI Ruuid GGtools GGBase Infrastructure GUI Ruuid GGtools GGBase

updated 14.1 years ago by Vincent J. Carey, Jr. 6.7k • written 14.1 years ago by Neel Aluru ▴ 460

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1.8k

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GUI GGtools GGBase GUI GGtools GGBase

updated 14.1 years ago by Vincent J. Carey, Jr. 6.7k • written 14.1 years ago by Neel Aluru ▴ 460

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2.7k

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GGtools GGtools

updated 14.1 years ago by Martin Morgan 25k • written 14.1 years ago by Mao Jianfeng ▴ 290

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1.2k

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GGtools GGtools

updated 14.3 years ago by Vincent J. Carey, Jr. 6.7k • written 14.3 years ago by Mao Jianfeng ▴ 290

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1.4k

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SNP HapMap GGtools SNP HapMap GGtools

updated 15.0 years ago by Vincent J. Carey, Jr. 6.7k • written 15.0 years ago by claire pujoll ▴ 30

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1.4k

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GGtools GGtools

updated 15.2 years ago by Vincent J. Carey, Jr. 6.7k • written 15.2 years ago by Paul Geeleher ★ 1.3k

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951

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SNP GGtools SNP GGtools

updated 16.7 years ago by Vincent J. Carey, Jr. 6.7k • written 16.7 years ago by Nathan Harmston ▴ 100

11 results • Page 1 of 1

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Comment: Annotation package for Manduca sexta by GA ▴ 10

Thank you!

Comment: Improving performance of edgeR and limma while adjusting for multiple confounder by ATpoint ★ 4.8k

If 2 minutes is inacceptable to you then you can still fall back to limma-trend which should give a dramatic speedup and finish in seconds.…

Comment: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Mike Smith ★ 6.6k

Great, thanks for the update from Ensembl. So the most relevant part of 'Location: Scaffold HG1277_PATCH: 137,021-141,806 forward strand' …

Answer: Improving performance of edgeR and limma while adjusting for multiple confounder by Gordon Smyth 52k

We recommend that you use voomLmFit() instead of voom+lmFit. We are pretty proud of the speed of glmQLFit and voom, and we hadn't expected…

Answer: Merging EPICV1 and V2 betas by James W. MacDonald 68k

It appears that [SeSAMe][1] has functions meant to do that sort of thing. [1]: https://bioconductor.org/packages/release/bioc/vignet…

Votes

Looking for equivalent EPIC chip v1 vs. v2 annotation variables

Properly constructing a hypergeometric test

A: Is logFC a log2 fold change or some other base in scran::findMarkers

Comment: Error in retrieving clinical data

What is the cheapest day to fly on American Airlines? {Ask_Expert}

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