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glmTreat
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6
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6
replies
2.0k
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GO enrichment analysis with goana after performing DE analysis with glmTreat
go
DE
edger
rnaseq
glmTreat
updated 4.0 years ago by
Gordon Smyth
50k • written 4.0 years ago by
Raito92
▴ 60
5
votes
5
replies
1.8k
views
interpreting FC values from glmTreat, especially unshrunk log-fold-changes
edgeR
glmTreat
significance testing
updated 4.5 years ago by
Yunshun Chen
▴ 840 • written 4.5 years ago by
flemi221
• 0
3
votes
3
replies
1.2k
views
Apply different cutoffs with edgeR pipeline and glmTreat for RNA-Seq DEG analysis
edger
differential gene expression
glmtreat
updated 5.5 years ago by
Gordon Smyth
50k • written 5.5 years ago by
svlachavas
▴ 830
0
votes
5
replies
1.5k
views
glmTreat Errors for multi coefficient and analysis of deviance situations.
edgeR
glmTreat
analysis of deviance
updated 6.4 years ago by
Ryan C. Thompson
★ 7.9k • written 6.4 years ago by
BharathAnanth
▴ 80
3
votes
2
replies
1.2k
views
ROAST after edgeR glmTreat and average RPKM filter
roast
edgeR
glmtreat
updated 7.7 years ago by
Aaron Lun
★ 28k • written 7.7 years ago by
b.nota
▴ 360
1
vote
1
reply
1.0k
views
Treat p > 1
edgeR
glmTreat
updated 7.9 years ago by
Yunshun Chen
▴ 840 • written 7.9 years ago by
James W. MacDonald
65k
6 results • Page
1 of 1
Recent ...
Replies
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
Gordon Smyth
50k
You have discovered something that I have pointed out many times on this forum. fgsea does not implement the classic GSEA method published …
Comment: Once again a "Model matrix not full rank"
by
James W. MacDonald
65k
In that case both time and treatment are identical things, so choose one and go with it.
Comment: Once again a "Model matrix not full rank"
by
arfranco
▴ 130
numbers 1 to 3 represent observations and/or replicates Control is control. The three controls are shown as Control_1, control_2 and Contr…
Answer: Once again a "Model matrix not full rank"
by
James W. MacDonald
65k
The time and treatment are essentially the same thing, so you cannot have both in the model at the same time. Do the numbers 1:3 represent …
Answer: DESeq2 v1.35.0
by
Michael Love
41k
That is not a release (odd 'y' digit). See Bioconductor help pages: https://contributions.bioconductor.org/description.html#description-ver…
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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