Bioconductor Go

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GO KEGG gage pathview

5 days ago danalvoronov ▴ 10

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3.8k

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clusterProfiler GO GO enrichment genesetenrichment

updated 8 weeks ago by jandrade • 0 • written 6.4 years ago by Huang, Lei [BSD] - CRI ▴ 20

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295

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DNAMethylation GO MethylationArray missMethyl EPICv2

updated 11 weeks ago by belinda.phipson ▴ 40 • written 11 weeks ago by s.malik • 0

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394

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GO limma CAMERA

updated 3 months ago by Gordon Smyth 50k • written 3 months ago by Tyler Sagendorf ▴ 10

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5.1k

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clusterProfiler AnnotationHub GO uniprot

updated 3 months ago by Guido Hooiveld ★ 4.0k • written 3.3 years ago by Alberto • 0

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476

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GO EnrichmentBrowser

updated 3 months ago by James W. MacDonald 66k • written 3 months ago by prity6459 • 0

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593

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GO ensembldb

7 months ago Rockbar • 0

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442

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go DESeq2

updated 8 months ago by James W. MacDonald 66k • written 8 months ago by Alvin • 0

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639

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GO biomaRt

updated 10 months ago by James W. MacDonald 66k • written 10 months ago by cstorer • 0

9 results • Page 1 of 1

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Comment: Ensembl plants at annotationHub? by Daniele • 0

Thank you so much!

Answer: recount3 problem downloading data from source sra by Leonardo Collado Torres ★ 1.0k

Hi, I wasn't able to reproduce the issue on both bioc 3.19 (current release version) and 3.18 (closer to your session info). My guess is…

Answer: Running ENmix with mouse methylation manifest: readidat error - Error in readman by minardsmitha ▴ 10

Well it turns out there is a typo in the manifest file name. This particular issue is resolved by correcting the typo. A new error now …

Answer: Documenting resources in an `ExperimentHub` package? by James W. MacDonald 66k

The easiest way to do that IMO is to use emacs/ESS (or I believe there is some newfangled thing called RStudio? Not personally familiar, bu…

Comment: ChAMP installation issue by shepherl 3.9k

We are still waiting for the goseq to respond to our requests but will take action next week if it is not resolved. ChAMP is currently una…

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Comment: Ensembl plants at annotationHub?

how to control age and gender effect in expression data using DESeq2

Answer: Error retrieving ensembl gene id using biomaRt...

Comment: LRT, more than two conditions and pairwise comparisons

Answer: Control group between 2 batches have different expression in RNAseq data

Awards • All

Scholar to Mike Smith ★ 6.5k

Popular Question to mohammedtoufiq91 ▴ 10