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enrichGO
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129
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Simplify - clusterProfiler
RNASeq
simplify
clusterProfiler
enrichGO
simplifyEnrichment
4 months ago
estafana.t98
• 0
1
vote
1
reply
468
views
enrichGO results
clusterProfiler
enrichGO
7 months ago
Shakiba
• 0
0
votes
2
replies
725
views
Too many genes in GO term after enrichGO
clusterProfiler
enrichGO
clusterPro
14 months ago
slimyMS
• 0
2
votes
2
replies
570
views
Using clusterProfiler for depletion analysis
clusterProfiler
enrichGO
14 months ago
samsiljee
• 0
2
votes
2
replies
948
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Mapping nothing when doing Enrichment Analysis of the TAIR using enrichGO in R
enrichGO
20 months ago
dailing57
• 0
0
votes
1
reply
4.0k
views
"No genes can be mapped...." using enrichGO in clusterProfiler
R
TAIR
clusterProfiler
enrichGO
Arabidopsis
updated 21 months ago by
Guido Hooiveld
★ 3.5k • written 21 months ago by
abby-s
• 0
2
votes
4
replies
1.6k
views
How to use EnrichGo of Cluster Profiler
EnrichGO
clusterProfiler
updated 3 months ago by
najib
• 0 • written 2.0 years ago by
Carolina
• 0
1
vote
10
replies
5.9k
views
keytype not supported in clusterprofiler when it is ensembl IDs?
clusterProfiler
enrichGO
updated 2.8 years ago by
James W. MacDonald
62k • written 2.8 years ago by
kavator
▴ 20
2
votes
8
replies
789
views
gene enrichment using enrichGO function throuth annotationHub orgDb
software error
enrichGO
annotationHub
clusterProfiler
Job
updated 2.8 years ago by
James W. MacDonald
62k • written 2.8 years ago by
bnajafpour
• 0
0
votes
2
replies
566
views
ClusterProfiler: enrichResult table with genes that do not have GO-term
ClusterProfiler
enrichGO
updated 3.0 years ago by
James W. MacDonald
62k • written 3.0 years ago by
Reb
• 0
0
votes
2
replies
1.1k
views
How to select a specific onthology after runing enrichGO for all 3 onthology
enrichGO
clusterprofiler
4.5 years ago
MAP
• 0
4
votes
2
replies
4.3k
views
How to export enrichGO results for future visualization with barplot, dotplot, emapplot...
clusterprofiler
enrichGO
barplot
dotplot
4.5 years ago
MAP
• 0
1
vote
1
reply
905
views
clusterProfiler enrichGO under-represented term
clusterProfiler
enrichGO
5.3 years ago
Francois Marchildon
▴ 20
13 results • Page
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Comment: mas5calls function doesn't work; mirna40cdf problem
by
Guido Hooiveld
★ 3.5k
Also: you could consider using `DABG` for present/absent calls. James elaborated on this in this thread: https://support.bioconductor.org/p…
Comment: mas5calls function doesn't work; mirna40cdf problem
by
James W. MacDonald
62k
Yes. Follow the recommendation in the link that was provided to you by Lori Shepherd.
Comment: mas5calls function doesn't work; mirna40cdf problem
by
Berna
• 0
Thank you for the information. I did not know that. Would you have a tip how I could proceed differently?
Comment: Correct use of Likelihood Ratio Test and LFC Shrinkage
by
ayabalbaa1990
• 0
Hi Michael, So I use this res_LRT <- results(dds_lrt) r2=lfcShrink(dds_lrt, coef=7, res=res_LRT) tu run lfcshrink with LRT, is that oko?…
Comment: Combat and dds Object
by
shaimaa
• 0
I used the combat-seq but the deseq complain as its not integer what should i do
Votes
Answer: mas5calls function doesn't work; mirna40cdf problem
Issue with bumphunter and TxDb.Hsapiens.UCSC.hg38.knownGene that could be due to S4Vectors or an installation problem
Strand information in a GAlignmentsList object derived from strand-specific paired-end RNA-seq data
Strand information in a GAlignmentsList object derived from strand-specific paired-end RNA-seq data
A: How to translate FASTA file of DNA sequence to protein sequence using Biostrings
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