Biostar EnrichGO

Showing : enrichGO • reset

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129

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RNASeq simplify clusterProfiler enrichGO simplifyEnrichment

4 months ago estafana.t98 • 0

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468

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clusterProfiler enrichGO

7 months ago Shakiba • 0

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725

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clusterProfiler enrichGO clusterPro

14 months ago slimyMS • 0

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570

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clusterProfiler enrichGO

14 months ago samsiljee • 0

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enrichGO

20 months ago dailing57 • 0

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4.0k

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R TAIR clusterProfiler enrichGO Arabidopsis

updated 21 months ago by Guido Hooiveld ★ 3.5k • written 21 months ago by abby-s • 0

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EnrichGO clusterProfiler

updated 3 months ago by najib • 0 • written 2.0 years ago by Carolina • 0

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clusterProfiler enrichGO

updated 2.8 years ago by James W. MacDonald 62k • written 2.8 years ago by kavator ▴ 20

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789

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software error enrichGO annotationHub clusterProfiler Job

updated 2.8 years ago by James W. MacDonald 62k • written 2.8 years ago by bnajafpour • 0

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566

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ClusterProfiler enrichGO

updated 3.0 years ago by James W. MacDonald 62k • written 3.0 years ago by Reb • 0

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enrichGO clusterprofiler

4.5 years ago MAP • 0

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clusterprofiler enrichGO barplot dotplot

4.5 years ago MAP • 0

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905

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clusterProfiler enrichGO

5.3 years ago Francois Marchildon ▴ 20

13 results • Page 1 of 1

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Comment: mas5calls function doesn't work; mirna40cdf problem by Guido Hooiveld ★ 3.5k

Also: you could consider using `DABG` for present/absent calls. James elaborated on this in this thread: https://support.bioconductor.org/p…

Comment: mas5calls function doesn't work; mirna40cdf problem by James W. MacDonald 62k

Yes. Follow the recommendation in the link that was provided to you by Lori Shepherd.

Comment: mas5calls function doesn't work; mirna40cdf problem by Berna • 0

Thank you for the information. I did not know that. Would you have a tip how I could proceed differently?

Comment: Correct use of Likelihood Ratio Test and LFC Shrinkage by ayabalbaa1990 • 0

Hi Michael, So I use this res_LRT <- results(dds_lrt) r2=lfcShrink(dds_lrt, coef=7, res=res_LRT) tu run lfcshrink with LRT, is that oko?…

Comment: Combat and dds Object by shaimaa • 0

I used the combat-seq but the deseq complain as its not integer what should i do

Votes

Answer: mas5calls function doesn't work; mirna40cdf problem

Issue with bumphunter and TxDb.Hsapiens.UCSC.hg38.knownGene that could be due to S4Vectors or an installation problem

Strand information in a GAlignmentsList object derived from strand-specific paired-end RNA-seq data

A: How to translate FASTA file of DNA sequence to protein sequence using Biostrings

Awards • All

Popular Question to Guido Hooiveld ★ 3.5k

Scholar to James W. MacDonald 62k

Commentator to Michael Love 39k