Showing : goseq • reset
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goseq - overrepresented p-values (Alicia Oshlack)
GO Category goseq GO Category goseq
14.4 years ago Gu Mi ▴ 30
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4.3k
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goseq - overrepresented p-values
GO Category goseq GO Category goseq
updated 14.4 years ago by ▴ 100 • written 14.4 years ago by ▴ 30
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Visualising the GO structure (RNA-seq) using topGO, and goseq
Microarray GO Visualization graph topGO goseq Microarray GO Visualization graph topGO
14.6 years ago Paolo Sonego ▴ 140
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goseq: gene universe
GOstats goseq GOstats goseq
updated 14.6 years ago by ★ 2.0k • written 14.6 years ago by ★ 6.0k
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1
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3.0k
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goseq problem
edgeR goseq edgeR goseq
14.6 years ago Naomi Altman ★ 6.0k
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3.1k
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goseq KEGG testing?
Pathways GO PROcess Category goseq Pathways GO PROcess Category goseq
updated 14.6 years ago by ▴ 40 • written 14.6 years ago by ★ 2.0k
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2.4k
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Can I know the number of genes in enriched GO category using GOseq
GO annotate Category goseq GO annotate Category goseq
updated 14.7 years ago by ▴ 40 • written 14.7 years ago by ▴ 150
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2.1k
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GO with R and Bioconductor
Transcription Annotation GO GOstats biomaRt topGO GSEABase goseq Transcription Annotation
14.7 years ago Duke ▴ 210
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5
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2.8k
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GO with R and Bioconductor
Transcription GO GOstats biomaRt topGO goseq Transcription GO GOstats biomaRt topGO
updated 14.7 years ago by 6.7k • written 14.7 years ago by ▴ 210
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Error GOseq
goseq goseq
updated 14.7 years ago by ▴ 40 • written 14.7 years ago by ▴ 150
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1.5k
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Error in package goseq
Organism goseq Organism goseq
15.2 years ago Joydeep Mitra ▴ 10
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[A question on goseq package with UCSC known gene ID]
GO goseq GO goseq
15.6 years ago sunghee OH ▴ 50
162 results • Page 4 of 4
Recent ...
Replies
Comment: Suppress warning in RHDF5 write by nicolas.lhuillier • 0
Thanks a lot for the quick and effective reply. I had tried "suppressWarnings" but not "suppressMessages".
Answer: Suppress warning in RHDF5 write by James W. MacDonald 68k
``` > fun <- function() message("this is a message") > fun() this is a message > suppressMessages(fun()) > ```
Answer: Failure to download resources (MeSHDb) from AnnotationHub by shepherl 4.2k
apologies. These are contributed by someone outside the core team. On upload I did not realize they included the older Bioconductor storage…
Answer: "Watched Tags" are being erased rather than updated by shepherl 4.2k
This should now be resolved
Answer: Question about collapsing ASVs by genus level during DESeq2 analysis by Michael Love 43k
I'll just note that microbiome stats folks tend to use other tools than DESeq2. > several ASVs belong to the same genus but are not iden…
Votes
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
Bioconductor 3.22 Released!
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Awards • All
Scholar to James W. MacDonald 68k
Popular Question to Daniel Cameron ▴ 40
Popular Question to Peter Hickey ▴ 760
Popular Question to edward.esiribloom • 0
Popular Question to Fred Hutch (Recruiting) ▴ 40
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