Showing : goseq • reset
1
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3
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GOseq warning message.
goseq
updated 10.6 years ago by ▴ 320 • written 10.6 years ago by ▴ 160
5
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2
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1.7k
views
GoSeq: Wallenius 264 overrepresented sampling 0?
goseq
updated 10.6 years ago by 53k • written 10.6 years ago by ▴ 10
2
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1
reply
1.5k
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GoSeq: use ENSEMBLTRANS as input
goseq ensembl
updated 10.6 years ago by ▴ 320 • written 10.6 years ago by ▴ 10
2
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7
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4.7k
views
mm10 ENSEMBL not available for GOSEQ
goseq RNAseq mm10
10.6 years ago Merienne Nicolas ▴ 120
5
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3
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3.2k
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GOSEQ: could not find any categories for many genes
goseq mm9
10.7 years ago Vivek.b ▴ 100
1
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2
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2.9k
views
Bias correction for enrichment analysis of 450k methylation data => feed bias adjusted genes into IPA
goseq 450k enrichment
updated 10.9 years ago by ▴ 40 • written 10.9 years ago by ▴ 10
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2
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1.8k
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Goseq problem with "missing value"
goseq
updated 10.9 years ago by ▴ 320 • written 10.9 years ago by ▴ 30
3
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3
replies
2.6k
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Goseq and yeast
goseq yeast
10.9 years ago Marek Gierlinski ▴ 30
0
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3
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1.7k
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goseq: recent update seems to restrict the range of applications
goseq
updated 10.9 years ago by ▴ 320 • written 11.1 years ago by ▴ 60
4
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4
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9.8k
views
Packages for GO and KEGG analysis on RNAseq data
GO gage goseq KEGG
updated 11.2 years ago by 53k • written 11.4 years ago by ▴ 120
1
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0
replies
1.5k
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how to fetch GO categories from Chinese hamster genome
GO Category goseq
11.4 years ago upendra kumar devisetty ▴ 30
0
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1
reply
1.8k
views
GO enrichment
GO Category goseq GO Category goseq
11.4 years ago Guest User ★ 13k
0
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3
replies
1.6k
views
Goseq datasets
RNASeq GO goseq RNASeq GO goseq
11.5 years ago Eduardo Andres Leon ▴ 30
0
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1
reply
2.0k
views
GOseq with ce6
GO Yeast Organism goseq genomes GO Yeast Organism goseq genomes
updated 11.8 years ago by ▴ 320 • written 11.8 years ago by ▴ 50
0
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1
reply
2.1k
views
GOseq at a specific level ?
GO goseq GO goseq
updated 11.8 years ago by ▴ 320 • written 11.9 years ago by ▴ 80
0
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0
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2.6k
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GOSeq with unsupported organism (Arabidopsis) and retrieving gene IDs from enriched GO categories
GO Organism PROcess goseq GO Organism PROcess goseq
11.9 years ago Dale Richardson ▴ 30
0
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4
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5.4k
views
Questions about GOseq after DESeq2
goseq DESeq2 goseq DESeq2
updated 11.9 years ago by 43k • written 11.9 years ago by ▴ 80
0
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0
replies
1.8k
views
goseq: pwf: Error in if (hi <= low) { : missing value where TRUE/FALSE needed
RNASeq GO goseq DESeq2 RNASeq GO goseq DESeq2
11.9 years ago 刘鹏飞 ▴ 80
0
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1
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1.9k
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help: goseq and makeOrgPackageFromNCBI in AnnotationForge
RNASeq GO Organism AnnotationDbi goseq RNASeq GO Organism AnnotationDbi goseq
updated 12.2 years ago by ★ 7.2k • written 12.2 years ago by ▴ 80
0
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1
reply
3.5k
views
How to get length information for mm10 genome and geneID gene Symbol?
goseq goseq
updated 12.2 years ago by ★ 7.2k • written 12.2 years ago by ▴ 10
0
votes
1
reply
2.1k
views
makeTranscriptDbFromGFF fails on NCBI Bacteria genomes
GO TranscriptDb goseq genomes GO TranscriptDb goseq genomes
updated 12.2 years ago by ★ 7.2k • written 12.2 years ago by ▴ 80
0
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0
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1.2k
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goseq and transcript length
Annotation GO PROcess goseq Annotation GO PROcess goseq
12.6 years ago Xulong Wang ▴ 10
0
votes
1
reply
2.1k
views
goseq and transcript length data
Annotation GO PROcess goseq Annotation GO PROcess goseq
updated 12.6 years ago by ▴ 320 • written 12.6 years ago by ★ 13k
0
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0
replies
1.0k
views
GOseq
GO goseq GO goseq
12.7 years ago Guest User ★ 13k
0
votes
1
reply
1.4k
views
goseq error messsage
goseq goseq
updated 12.8 years ago by ▴ 320 • written 12.8 years ago by ★ 13k
0
votes
1
reply
1.4k
views
Negative parameter error when using goseq
GO goseq GO goseq
updated 12.9 years ago by ▴ 320 • written 12.9 years ago by ▴ 570
0
votes
0
replies
2.1k
views
SPIA algorithm organisms not included already in the SPIA package
Organism SPIA goseq KEGGREST Organism SPIA goseq KEGGREST
12.9 years ago Tarca, Adi ▴ 570
1
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2
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3.9k
views
mm10 goseq supported genome
annotate goseq annotate goseq
updated 13.0 years ago by ▴ 320 • written 13.0 years ago by ▴ 140
0
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0
replies
1.1k
views
goseq: biased distribution of p-values
GO GenomicFeatures goseq GO GenomicFeatures goseq
13.1 years ago Joachim Jacob ▴ 10
0
votes
4
replies
3.1k
views
goseq analysis
GO graph edgeR goseq GO graph edgeR goseq
updated 13.2 years ago by ▴ 100 • written 13.2 years ago by ▴ 210
0
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1
reply
1.1k
views
Problem installing goseq and RCurl
goseq goseq
13.2 years ago Dave Tang ▴ 210
0
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5
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3.4k
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Problem installing goseq and RCurl
goseq goseq
updated 13.2 years ago by ★ 8.2k • written 13.2 years ago by ▴ 210
0
votes
3
replies
1.5k
views
rna-seq
Microarray Pathways Network goseq Microarray Pathways Network goseq
updated 13.3 years ago by ▴ 350 • written 13.3 years ago by ★ 13k
0
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0
replies
1.1k
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GOSEQ help
Pathways GO goseq Pathways GO goseq
13.3 years ago Emma Quinn ▴ 20
1
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1
reply
3.5k
views
goseq/nullp with non-native identifiers
Annotation GO zebrafish goseq Annotation GO zebrafish goseq
updated 13.4 years ago by ▴ 100 • written 13.4 years ago by ▴ 140
0
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0
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2.9k
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gene set enrichment analysis of RNA-Seq data
Microarray limma GLAD edgeR goseq Microarray limma GLAD edgeR goseq
13.7 years ago Paolo Guarnieri ▴ 20
2
votes
5
replies
4.6k
views
gene set enrichment analysis of RNA-Seq data
Microarray goseq Microarray goseq
updated 13.7 years ago by 53k • written 13.8 years ago by ▴ 110
0
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1
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1.9k
views
GOseq for enrichment of clustering results
GO Clustering goseq GO Clustering goseq
updated 13.8 years ago by ▴ 100 • written 13.8 years ago by ▴ 110
0
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1
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1.8k
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geneLenDataBase installation issues
GO rtracklayer goseq BiocInstaller GO rtracklayer goseq BiocInstaller
updated 13.8 years ago by 25k • written 13.8 years ago by ▴ 50
0
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2
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2.5k
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Goseq plot
biomaRt goseq biomaRt goseq
updated 13.9 years ago by ▴ 100 • written 13.9 years ago by ▴ 220
0
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6
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1.8k
views
Making use of the Apis mellifera assembly 2 data in goSeq
GO Organism Apis mellifera goseq GO Organism Apis mellifera goseq
updated 13.9 years ago by 16k • written 13.9 years ago by ▴ 30
0
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0
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1.4k
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Goseq plot
Annotation biomaRt goseq Annotation biomaRt goseq
13.9 years ago Alpesh Querer ▴ 220
0
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0
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1.1k
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making use of the Apis mellifera BeeBase assembly 4 data in goseq
Annotation GO Cancer Apis mellifera BSgenome Biostrings BSgenome rtracklayer goseq GO
13.9 years ago Alicia Oshlack ▴ 100
0
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0
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1.0k
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making use of the Apis mellifera BeeBase assembly 4 data in goseq
Annotation GO Cancer BSgenome Biostrings BSgenome rtracklayer GenomicFeatures goseq GO
13.9 years ago Hervé Pagès 16k
0
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1
reply
1.3k
views
GOseq error
GO goseq GO goseq
updated 13.9 years ago by ▴ 930 • written 13.9 years ago by ▴ 100
0
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0
replies
901
views
GOSeq error
GO goseq GO goseq
13.9 years ago Iain Gallagher ▴ 930
0
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1
reply
1.4k
views
goSeq error
Cancer PROcess edgeR goseq ASSIGN Cancer PROcess edgeR goseq ASSIGN
14.2 years ago Matthew Young ▴ 50
0
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0
replies
1.4k
views
goSeq error (steve Shen)
GO Category edgeR goseq GO Category edgeR goseq
14.2 years ago Alicia Oshlack ▴ 100
0
votes
2
replies
1.5k
views
goSeq error
GO edgeR goseq GO edgeR goseq
updated 14.2 years ago by ★ 13k • written 14.2 years ago by ▴ 70
0
votes
2
replies
2.7k
views
RNA seq analysis of Arabidopsis genome
GO Category goseq GO Category goseq
updated 14.3 years ago by ▴ 50 • written 14.4 years ago by ▴ 10
162 results • Page 3 of 4
Recent ...
Replies
Answer: When to use edgeR or limma by Gordon Smyth 53k
The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
I updated the above answer today.
Answer: When to use edgeR or limma by James W. MacDonald 68k
I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
Answer: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
The short answer is that limpa reads standard feature-level intensities from Spectronaut or other quantifications tools. limpa is designed …
Comment: Question about the filterByExpr function inputs in edgeR by mohammedtoufiq91 ▴ 10
@gordonsmyth Noted, thank you very much.
Votes
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
A: deseq2 - paired samples in 2 sequencing types with very different library sizes
Comment: Question about the filterByExpr function inputs in edgeR
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