Showing : goseq • reset
1
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3
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2.9k
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GOseq warning message.
goseq
updated 10.4 years ago by ▴ 320 • written 10.4 years ago by ▴ 160
5
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2
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1.6k
views
GoSeq: Wallenius 264 overrepresented sampling 0?
goseq
updated 10.4 years ago by 53k • written 10.5 years ago by ▴ 10
2
votes
1
reply
1.4k
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GoSeq: use ENSEMBLTRANS as input
goseq ensembl
updated 10.4 years ago by ▴ 320 • written 10.5 years ago by ▴ 10
2
votes
7
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4.6k
views
mm10 ENSEMBL not available for GOSEQ
goseq RNAseq mm10
10.5 years ago Merienne Nicolas ▴ 120
5
votes
3
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3.1k
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GOSEQ: could not find any categories for many genes
goseq mm9
10.5 years ago Vivek.b ▴ 100
1
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2
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2.8k
views
Bias correction for enrichment analysis of 450k methylation data => feed bias adjusted genes into IPA
goseq 450k enrichment
updated 10.7 years ago by ▴ 40 • written 10.7 years ago by ▴ 10
1
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2
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1.7k
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Goseq problem with "missing value"
goseq
updated 10.7 years ago by ▴ 320 • written 10.7 years ago by ▴ 30
3
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3
replies
2.6k
views
Goseq and yeast
goseq yeast
10.7 years ago Marek Gierlinski ▴ 30
0
votes
3
replies
1.7k
views
goseq: recent update seems to restrict the range of applications
goseq
updated 10.7 years ago by ▴ 320 • written 10.9 years ago by ▴ 60
4
votes
4
replies
9.2k
views
Packages for GO and KEGG analysis on RNAseq data
GO gage goseq KEGG
updated 11.1 years ago by 53k • written 11.2 years ago by ▴ 120
1
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0
replies
1.5k
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how to fetch GO categories from Chinese hamster genome
GO Category goseq
11.2 years ago upendra kumar devisetty ▴ 30
0
votes
1
reply
1.7k
views
GO enrichment
GO Category goseq GO Category goseq
11.2 years ago Guest User ★ 13k
0
votes
3
replies
1.6k
views
Goseq datasets
RNASeq GO goseq RNASeq GO goseq
11.3 years ago Eduardo Andres Leon ▴ 30
0
votes
1
reply
1.9k
views
GOseq with ce6
GO Yeast Organism goseq genomes GO Yeast Organism goseq genomes
updated 11.6 years ago by ▴ 320 • written 11.6 years ago by ▴ 50
0
votes
1
reply
2.0k
views
GOseq at a specific level ?
GO goseq GO goseq
updated 11.6 years ago by ▴ 320 • written 11.7 years ago by ▴ 80
0
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0
replies
2.6k
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GOSeq with unsupported organism (Arabidopsis) and retrieving gene IDs from enriched GO categories
GO Organism PROcess goseq GO Organism PROcess goseq
11.7 years ago Dale Richardson ▴ 30
0
votes
4
replies
5.3k
views
Questions about GOseq after DESeq2
goseq DESeq2 goseq DESeq2
updated 11.7 years ago by 43k • written 11.7 years ago by ▴ 80
0
votes
0
replies
1.7k
views
goseq: pwf: Error in if (hi <= low) { : missing value where TRUE/FALSE needed
RNASeq GO goseq DESeq2 RNASeq GO goseq DESeq2
11.7 years ago 刘鹏飞 ▴ 80
0
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1
reply
1.9k
views
help: goseq and makeOrgPackageFromNCBI in AnnotationForge
RNASeq GO Organism AnnotationDbi goseq RNASeq GO Organism AnnotationDbi goseq
updated 12.0 years ago by ★ 7.2k • written 12.0 years ago by ▴ 80
0
votes
1
reply
3.4k
views
How to get length information for mm10 genome and geneID gene Symbol?
goseq goseq
updated 12.0 years ago by ★ 7.2k • written 12.0 years ago by ▴ 10
0
votes
1
reply
2.0k
views
makeTranscriptDbFromGFF fails on NCBI Bacteria genomes
GO TranscriptDb goseq genomes GO TranscriptDb goseq genomes
updated 12.0 years ago by ★ 7.2k • written 12.0 years ago by ▴ 80
0
votes
0
replies
1.2k
views
goseq and transcript length
Annotation GO PROcess goseq Annotation GO PROcess goseq
12.4 years ago Xulong Wang ▴ 10
0
votes
1
reply
2.1k
views
goseq and transcript length data
Annotation GO PROcess goseq Annotation GO PROcess goseq
updated 12.4 years ago by ▴ 320 • written 12.4 years ago by ★ 13k
0
votes
0
replies
994
views
GOseq
GO goseq GO goseq
12.5 years ago Guest User ★ 13k
0
votes
1
reply
1.4k
views
goseq error messsage
goseq goseq
updated 12.6 years ago by ▴ 320 • written 12.6 years ago by ★ 13k
0
votes
1
reply
1.3k
views
Negative parameter error when using goseq
GO goseq GO goseq
updated 12.7 years ago by ▴ 320 • written 12.7 years ago by ▴ 570
0
votes
0
replies
2.0k
views
SPIA algorithm organisms not included already in the SPIA package
Organism SPIA goseq KEGGREST Organism SPIA goseq KEGGREST
12.7 years ago Tarca, Adi ▴ 570
1
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2
replies
3.9k
views
mm10 goseq supported genome
annotate goseq annotate goseq
updated 12.8 years ago by ▴ 320 • written 12.8 years ago by ▴ 140
0
votes
0
replies
1.0k
views
goseq: biased distribution of p-values
GO GenomicFeatures goseq GO GenomicFeatures goseq
12.9 years ago Joachim Jacob ▴ 10
0
votes
4
replies
3.0k
views
goseq analysis
GO graph edgeR goseq GO graph edgeR goseq
updated 13.0 years ago by ▴ 100 • written 13.0 years ago by ▴ 210
0
votes
1
reply
1.1k
views
Problem installing goseq and RCurl
goseq goseq
13.0 years ago Dave Tang ▴ 210
0
votes
5
replies
3.3k
views
Problem installing goseq and RCurl
goseq goseq
updated 13.0 years ago by ★ 8.2k • written 13.0 years ago by ▴ 210
0
votes
3
replies
1.4k
views
rna-seq
Microarray Pathways Network goseq Microarray Pathways Network goseq
updated 13.1 years ago by ▴ 350 • written 13.1 years ago by ★ 13k
0
votes
0
replies
1.1k
views
GOSEQ help
Pathways GO goseq Pathways GO goseq
13.1 years ago Emma Quinn ▴ 20
1
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1
reply
3.4k
views
goseq/nullp with non-native identifiers
Annotation GO zebrafish goseq Annotation GO zebrafish goseq
updated 13.2 years ago by ▴ 100 • written 13.2 years ago by ▴ 140
0
votes
0
replies
2.9k
views
gene set enrichment analysis of RNA-Seq data
Microarray limma GLAD edgeR goseq Microarray limma GLAD edgeR goseq
13.5 years ago Paolo Guarnieri ▴ 20
2
votes
5
replies
4.5k
views
gene set enrichment analysis of RNA-Seq data
Microarray goseq Microarray goseq
updated 13.5 years ago by 53k • written 13.6 years ago by ▴ 110
0
votes
1
reply
1.9k
views
GOseq for enrichment of clustering results
GO Clustering goseq GO Clustering goseq
updated 13.6 years ago by ▴ 100 • written 13.6 years ago by ▴ 110
0
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1
reply
1.7k
views
geneLenDataBase installation issues
GO rtracklayer goseq BiocInstaller GO rtracklayer goseq BiocInstaller
updated 13.6 years ago by 25k • written 13.6 years ago by ▴ 50
0
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2
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2.4k
views
Goseq plot
biomaRt goseq biomaRt goseq
updated 13.7 years ago by ▴ 100 • written 13.7 years ago by ▴ 220
0
votes
6
replies
1.7k
views
Making use of the Apis mellifera assembly 2 data in goSeq
GO Organism Apis mellifera goseq GO Organism Apis mellifera goseq
updated 13.7 years ago by 16k • written 13.7 years ago by ▴ 30
0
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0
replies
1.4k
views
Goseq plot
Annotation biomaRt goseq Annotation biomaRt goseq
13.7 years ago Alpesh Querer ▴ 220
0
votes
0
replies
1.1k
views
making use of the Apis mellifera BeeBase assembly 4 data in goseq
Annotation GO Cancer Apis mellifera BSgenome Biostrings BSgenome rtracklayer goseq GO
13.7 years ago Alicia Oshlack ▴ 100
0
votes
0
replies
996
views
making use of the Apis mellifera BeeBase assembly 4 data in goseq
Annotation GO Cancer BSgenome Biostrings BSgenome rtracklayer GenomicFeatures goseq GO
13.7 years ago Hervé Pagès 16k
0
votes
1
reply
1.3k
views
GOseq error
GO goseq GO goseq
updated 13.7 years ago by ▴ 930 • written 13.7 years ago by ▴ 100
0
votes
0
replies
878
views
GOSeq error
GO goseq GO goseq
13.7 years ago Iain Gallagher ▴ 930
0
votes
1
reply
1.4k
views
goSeq error
Cancer PROcess edgeR goseq ASSIGN Cancer PROcess edgeR goseq ASSIGN
14.0 years ago Matthew Young ▴ 50
0
votes
0
replies
1.4k
views
goSeq error (steve Shen)
GO Category edgeR goseq GO Category edgeR goseq
14.0 years ago Alicia Oshlack ▴ 100
0
votes
2
replies
1.5k
views
goSeq error
GO edgeR goseq GO edgeR goseq
updated 14.0 years ago by ★ 13k • written 14.0 years ago by ▴ 70
0
votes
2
replies
2.6k
views
RNA seq analysis of Arabidopsis genome
GO Category goseq GO Category goseq
updated 14.1 years ago by ▴ 50 • written 14.2 years ago by ▴ 10
162 results • Page 3 of 4
Recent ...
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Comment: Save the Date for EuroBioC2026 in Turku! by jamesbennettki • 0
That sounds amazing I have always wanted to visit Finland and meet others in the Bioconductor community Events like EuroBioC2026 inspire me…
Answer: "Watched Tags" are being erased rather than updated by shepherl 4.2k
This should now be resolved
Answer: Question about collapsing ASVs by genus level during DESeq2 analysis by Michael Love 43k
I'll just note that microbiome stats folks tend to use other tools than DESeq2. > several ASVs belong to the same genus but are not iden…
Answer: Integration: Paired-end vs healthy single-end from a different source by James W. MacDonald 68k
If by reprocess you mean generate libraries and re-sequence, then that's something you could do. Otherwise the biological and technical dif…
Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112
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Bioconductor 3.22 Released!
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
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