Bioconductor Grn

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GRN BioNERO

updated 2.9 years ago by Fabricio Almeida-Silva ▴ 40 • written 3.0 years ago by majeedaasim • 0

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grndata GRN ARACNE WGCNA

3.6 years ago Harrsha • 0

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microarray GRN gene interaction

updated 9.8 years ago by chris86 ▴ 420 • written 9.8 years ago by shaheryar • 0

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microarray gene interaction GRN r

updated 9.8 years ago by chris86 ▴ 420 • written 9.8 years ago by shaheryar • 0

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microarray gene interaction GRN

updated 10.2 years ago by Robert Castelo ★ 3.4k • written 10.2 years ago by shaheryar • 0

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Comment: Which preprocessing steps are needed before running limpa? by miro165sabo • 0

Hi @gordonsmyth, thank you a lot for very fast and valuable response. I edited the question to provide more details.

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ? by Gordon Smyth 53k

I tend to use dpcCN(), because it more robust than dpc() to experiments with lots of samples and big differences between samples. You coul…

Answer: Which preprocessing steps are needed before running limpa? by Gordon Smyth 53k

Please see the example limpa analyses given at <http://github.com/smythlab/limpa>, especially the kidney cancer case study. limpa does not…

Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name by Korneel • 0

Thanks for the quick reply! If I understand correctly, I think if I keep track of the full lineage, I shouldn't have any risk of collapsin…

Comment: Pathway abundance data from Curatedmetagenomics by yesquokkan • 0

Hello, I was also wondering about the same issue. Did you figure it out?

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Answer: Which preprocessing steps are needed before running limpa?

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?

Answer: Which preprocessing steps are needed before running limpa?

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?

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Scholar to Gordon Smyth 53k

Popular Question to Peter Hickey ▴ 760