Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
gsva
•
reset
1
vote
1
reply
607
views
GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct" and "unused arguments (exprsData = as.matrix(rna_seq_sub), gset.idx…
GSVA
updated 18 days ago by
ATpoint
★ 4.7k • written 18 days ago by
amien.vp
• 0
5
votes
4
replies
962
views
Unused arguments error without used arguments in GSVA?
GSVA
updated 6 weeks ago by
Axel Klenk
★ 1.1k • written 6 weeks ago by
1sunmic2
• 0
1
vote
2
replies
646
views
Pre-filtering TPM kallisto for ssGSEA / DESeq2
tximport
DESeq2
GSVA
3 months ago
georgii.vdovin
• 0
1
vote
5
replies
690
views
Identifying potentially associated gene set to drug response using GSVA
drug
RNASeq
GSVA
written 4 months ago by
Kent
• 0
1
vote
4
replies
1.5k
views
GSVA ssGSEA vs. Broad implementation of ssGSEA
enrichment
GSVA
ssGSEA
updated 4 months ago by
Tyler Sagendorf
▴ 10 • written 5 months ago by
Bob
▴ 10
0
votes
1
reply
1.3k
views
Job:
Research software engineer at UPF Barcelona
JobPosting
Devel
GSVA
Software
written 2.3 years ago by
Robert Castelo
★ 3.4k
0
votes
1
reply
688
views
Should the expression data be filtered for `Protein-Coding Genes` before Running ssGSEA?
ssgsea
GSVA
gsea
updated 7 months ago by
Axel Klenk
★ 1.1k • written 7 months ago by
Bioinformagician
• 0
1
vote
4
replies
1.8k
views
Should I perform batch correction of normalized RNA-seq counts prior to GSVA?
GSVA
GSVAdata
RNAseq
8 months ago • updated 7 months ago
Lucy
▴ 60
1
vote
1
reply
651
views
GSVA 1.52.2 (new API) nb of workers?
parallelize
workers
GSVA
updated 9 months ago by
Axel Klenk
★ 1.1k • written 9 months ago by
johanna.galvis
• 0
1
vote
2
replies
635
views
Interpretation of GSVA with absRanking=TRUE
GSVA
9 months ago
gad.abraham
• 0
0
votes
3
replies
1.4k
views
GSVA function
DESeq2
GSVA
ssGSEA
updated 9 months ago by
Robert Castelo
★ 3.4k • written 9 months ago by
michelafrancesconi8
• 0
4
votes
5
replies
1.4k
views
Method to find pathways different between 2 groups
fgsea
GSVA
CAMERA
10 months ago
Chris
▴ 20
0
votes
0
replies
436
views
Could we detect difference at pathway level but not significant different at gene level?
GSVA
10 months ago
Chris
▴ 20
1
vote
2
replies
4.8k
views
GSVA error
GSVA
11 months ago
Alex
• 0
1
vote
6
replies
1.1k
views
GSVA on separate healthy and disease datasets
GSVA
updated 11 months ago by
James W. MacDonald
68k • written 11 months ago by
Lucy
▴ 60
4
votes
4
replies
3.3k
views
How should I run ssGSEA Hallmark Enrichment Analysis?
ssgsea
GSVA
biotype
proteincoding
msigdb
updated 5 months ago by
tifaGis
• 0 • written 15 months ago by
snijesh
▴ 200
1
vote
6
replies
6.8k
views
GSVA on RNAseq data
gsva
rnaseq
updated 4 weeks ago by
Robert Castelo
★ 3.4k • written 5.9 years ago by
rocanja
▴ 60
17 results • Page
1 of 1
Recent ...
Replies
Answer: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with
by
Gordon Smyth
52k
> Specific Question 1: Is there a preferred paradigm for voomLmFit for paired RNA-seq between blocking on individual and including individu…
Comment: Problem at champ.load
by
Josh
• 0
See my anser--I was able to fix this error by installing a specific ChAMP version
Answer: Problem at champ.load
by
Josh
• 0
It looks like the current Bioconducter version of ChAMP (2.36) does not support EPICv2. You have to install a github version of a previous …
Comment: DESeq2 model - How to test case/control time course model when taking account wi
by
wuwenhui2
• 0
@mikelove Dear Dr. Love, for this design, you recommend using the model "~condition + time + condition:subject.nested + condition:time" com…
Answer: myvariant error
by
Christelle
• 0
An example of my data : [1] "chr1:g.877831T>C" [2] "chr1:g.878314G>C" …
Votes
Comment: Identifying potentially associated gene set to drug response using GSVA
Answer: Limma - Complex 2-way multi-level contrast with paired samples
Comment: Can't post a question?
Answer: Limma - Complex 2-way multi-level contrast with paired samples
Answer: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
Awards
• All
Popular Question
to
Luca
• 0
Popular Question
to
Hervé Pagès
16k
Scholar
to
Michael Love
43k
Scholar
to
James W. MacDonald
68k
Popular Question
to
Wolfgang RAFFELSBERGER
▴ 140
Locations
• All
WEHI, Melbourne, Australia,
17 minutes ago
United Kingdom,
20 minutes ago
United States,
1 hour ago
United States,
2 hours ago
Australia,
2 hours ago
Traffic: 516 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6