Bioconductor Ssgsea

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enrichment GSVA ssGSEA

updated 6 months ago by Tyler Sagendorf ▴ 10 • written 7 months ago by Bob ▴ 30

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894

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ssgsea GSVA gsea

updated 9 months ago by Axel Klenk ★ 1.1k • written 9 months ago by Bioinformagician • 0

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1.6k

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DESeq2 GSVA ssGSEA

updated 11 months ago by Robert Castelo ★ 3.4k • written 12 months ago by michelafrancesconi8 • 0

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ssgsea GSVA biotype proteincoding msigdb

updated 7 months ago by tifaGis • 0 • written 17 months ago by snijesh ▴ 200

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enrichment GSVA enrichplot ssGSEA

updated 3.1 years ago by Robert Castelo ★ 3.4k • written 3.1 years ago by Davide • 0

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3.2k

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gsea ssgsea gsva pathways

updated 4.9 years ago by Robert Castelo ★ 3.4k • written 4.9 years ago by igor ▴ 50

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ssgsea gsva piano egsea

updated 17 months ago by amin8w ▴ 10 • written 7.8 years ago by sina.nassiri ▴ 130

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gsea gsva ssgsea

7.3 years ago jaison75 ▴ 20

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3.9k

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gsva ssgsea

9.5 years ago Momeneh Foroutan ▴ 10

9 results • Page 1 of 1

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Comment: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm by James W. MacDonald 68k

Probably not. Any given gene may be appended with many different GO terms, so you would end up with something that is not very useful. ``…

Comment: Heatmap of rnaseq data with z-score scale by James W. MacDonald 68k

`heatmap.2` is a CRAN package, and that's the relevant issue for this plot. It's got nothing to do with `DESeq2` or any other Bioconductor …

Comment: Limma suqeezeVar by Mengchun • 0

Hi Gordon, Thank you for your reply. I'm working on a proteomics data imputation project, I would like to describe the intensity distribut…

Comment: Heatmap of rnaseq data with z-score scale by giovanna • 0

thank you for your reply. I'm sorry if the question is off topic. the analysis and relative construction of the heatmap was done using bioc…

Answer: Heatmap of rnaseq data with z-score scale by James W. MacDonald 68k

Without including the row names for the heatmap, it's impossible to know if the directionality is switched or not. Do note that the orderin…

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Answer: LogFC values in edgeR - w/wo intercept

How to formulate 2 factor nested design in DESeq2

Answer: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm

Deseq2 DE analysis of host-pathogen samples (model separately or jointly?)

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