Bioconductor Biotype

Showing : biotype • reset

votes

replies

4.0k

views

ssgsea GSVA biotype proteincoding msigdb

updated 7 months ago by tifaGis • 0 • written 17 months ago by snijesh ▴ 200

votes

2.0k

views

grch37 transcripts biotype biomaRt ncrna

updated 6.8 years ago by James W. MacDonald 68k • written 6.8 years ago by sergio.martinezcuesta ▴ 10

vote

replies

2.2k

views

DESeq2 PCA rlog transformation biotype

7.1 years ago JoannaF ▴ 10

vote

replies

1.2k

views

scater sce biotype R

updated 7.2 years ago by Aaron Lun ★ 28k • written 7.2 years ago by thebadpenny • 0

vote

replies

1.7k

views

biomart TF biotype ensembl mus musculus

updated 7.3 years ago by Mike Smith ★ 6.6k • written 7.3 years ago by rbronste ▴ 60

5 results • Page 1 of 1

Recent ...

Replies

Answer: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm by James W. MacDonald 68k

``` library(org.Dm.eg.db) rn <- select(org.Dm.eg.db, row.names(cent_expr_matrix), "SYMBOL","FLYBASE") ## ensure no NA values get propaga…

Comment: Discrepancies in normalised count data vs unnormalised by AMgroup • 0

Thank you for your explanation, that makes sense. Do you have any suggestions on how to deal with this issue? if it is an issue? especially…

Comment: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and G by nytwordlehints • 0

I have always had a great fondness for games, so witnessing their transformation into animated versions is truly a delightful experience. […

Comment: FlowSOM is unable to create Output by EvangelinePope • 0

I will remember it, Thank you so much for sharing.

Answer: Limma suqeezeVar by Gordon Smyth 52k

I am not quite clear why you're not using the limma package directly, because it will compute all the variances and the df automatically fo…

Votes

Answer: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm

Deseq2 DE analysis of host-pathogen samples (model separately or jointly?)

Comment: Check removeBatchEffect effectiveness

Answer: Check removeBatchEffect effectiveness

A: what should I do with many zero counts from Salmon quantification

Awards • All