Bioconductor Biotype

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ssgsea GSVA biotype proteincoding msigdb

updated 9 weeks ago by Ginny • 0 • written 12 months ago by snijesh ▴ 200

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1.8k

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grch37 transcripts biotype biomaRt ncrna

updated 6.3 years ago by James W. MacDonald 67k • written 6.3 years ago by sergio.martinezcuesta ▴ 10

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DESeq2 PCA rlog transformation biotype

6.6 years ago JoannaF ▴ 10

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scater sce biotype R

updated 6.7 years ago by Aaron Lun ★ 28k • written 6.7 years ago by thebadpenny • 0

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biomart TF biotype ensembl mus musculus

updated 6.9 years ago by Mike Smith ★ 6.6k • written 6.9 years ago by rbronste ▴ 60

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Comment: contrast matrix design for a continuous variable by dtzhu337 • 0

Thank you, Gordon. X is time splines for time point, and yes, it's needed. However, I was also thinking to incorporate time point with se…

Answer: contrast matrix design for a continuous variable by Gordon Smyth 52k

Yes, the design and contrasts are correct. Your analysis is also adjusted for covariates defined by X, which I assume is what you want to …

Comment: fail to use addPerROIQC in Rmd by liu.n • 0

That's odd. So it can run successfully within markdown but would be failed when knitting?

Comment: fail to use addPerROIQC in Rmd by joseph.joonsang • 0

> dim(spe) [1] 19962 425

Comment: fail to use addPerROIQC in Rmd by liu.n • 0

Hi, what's the output from `dim(spe)`?

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Answer: contrast matrix design for a continuous variable

A: What's the difference between p.adjust and qvalue?

Answer: DESeq2- merging technical vs biological replicates

Comment: What type of counts data to import for performing Isoform analysis in edgeR

Answer: What type of counts data to import for performing Isoform analysis in edgeR

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Popular Question to joseph.joonsang • 0

Popular Question to Hans-Ulrich Klein ▴ 330