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Recent ...
Replies
Comment: Inconsistent results in DiffBind
by
ATpoint
★
3.6k
One is the "raw" logFCs, not corrected for the standard error of the logFCs, the other one the shrunken logFCs from DESeq2 lfcShrink, "corr…
Answer: Can't download Bioconductor
by
James W. MacDonald
64k
[You need to update][1].
[1]: https://cran.r-project.org/web/packages/BiocManager/vignettes/BiocManager.html#basic-use
Comment: Can't download Bioconductor
by
ATpoint
★
3.6k
Please see especially the 1st and 2nd point in https://www.bioconductor.org/help/support/posting-guide/#keypoints
Comment: Small RNA-seq Analysis DESEQ2 : Unexpected Significance
by
Michael Love
41k
With 3 vs 3, when one sample increases from 50 to 5000, this can lead to rejection of null hypothesis. I'm not surprised with the above cou…
Comment: Small RNA-seq Analysis DESEQ2 : Unexpected Significance
by
samer
▴
10
This is the result i got when i only looked on day 04 for the gene in example 1 posted above
dds_sub <- dds[, dds$date %in% c("day04"…
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