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gsva
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Can limma be used with module eigengenes instead of genes?
limma
WGCNA
GSVA
written 6 months ago by
A.Barden
▴ 20
1
vote
1
reply
2.5k
views
GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct" and "unused arguments (exprsData = as.matrix(rna_seq_sub), gset.idx…
GSVA
updated 11 months ago by
ATpoint
★ 5.0k • written 11 months ago by
amien.vp
• 0
5
votes
5
replies
3.0k
views
Unused arguments error without used arguments in GSVA?
GSVA
updated 10 months ago by
michaelarringtony
• 0 • written 12 months ago by
1sunmic2
• 0
1
vote
2
replies
1.8k
views
GSVA 1.52.2 (new API) nb of workers?
parallelize
workers
GSVA
written 20 months ago by
johanna.galvis
• 0
0
votes
1
reply
1.3k
views
Could we detect difference at pathway level but not significant different at gene level?
GSVA
written 21 months ago by
Chris
▴ 20
1
vote
2
replies
2.9k
views
Cleaning GeneSets from GSEA
msigdb
GSEABase
GSVA
written 3.9 years ago by
forlani.luca
• 0
1
vote
6
replies
8.0k
views
GSVA on RNAseq data
gsva
rnaseq
updated 12 months ago by
Robert Castelo
★ 3.4k • written 6.8 years ago by
rocanja
▴ 60
7 results • Page
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Comment: Deseq2 DE analysis of host-pathogen samples (model separately or jointly?)
by
a2a2ddrhaa
• 0
For those taking a break from the lab, the CT777 Game download https://ct7777.pk/ offers a high-performance entry into online mobile gaming…
Answer: Subsetting data verses contrasts [DESeq2]?
by
ATpoint
★ 5.0k
This has been asked many times before, please search for relevant posts. In short: Generally it is least tedious to not split the data and …
Comment: Bulk RNAseq analysis for
by
Mariami
• 0
Thank you so much for your help! will try to proceed with the suggestion
Comment: Bulk RNAseq analysis for
by
Mariami
• 0
Thank you for the explanation. I understand, although at the moment we are limited in our ability to increase N. My concern came from the o…
Answer: Bulk RNAseq analysis for
by
Gordon Smyth
53k
All three packages allow paired comparisons, where the clone is the "pair". limma moreover allows mixed models (just run `voomLmFit` with `…
Votes
Comment: Are transformed values from rlog /vst log2 normalized counts?
Are transformed values from rlog /vst log2 normalized counts?
Answer: Bulk RNAseq analysis for
Answer: DiffBind differential analysis
Answer: Limma-voom sample weights and impact on DEG numbers
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