Bioconductor Gsva

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ssgsea gsva piano egsea

updated 5 months ago by amin8w ▴ 10 • written 6.8 years ago by sina.nassiri ▴ 130

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GSVA RNASeq limma

updated 10 months ago by Gordon Smyth 50k • written 10 months ago by Jonathan ▴ 10

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1.8k

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GSVA

updated 8 weeks ago by Moritz ▴ 10 • written 2.9 years ago by resa • 0

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1.6k

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escape UCell GSVA

updated 5 months ago by arina • 0 • written 14 months ago by Omer • 0

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626

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ssgsea GSVA biotype proteincoding msigdb

updated 5 months ago by Robert Castelo ★ 3.3k • written 5 months ago by snijesh ▴ 20

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502

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GSVA

20 days ago • updated 18 days ago Alex • 0

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485

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GSVA

updated 23 days ago by James W. MacDonald 65k • written 24 days ago by Lucy ▴ 60

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GSVA

4 days ago Chris • 0

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404

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GSVA

updated 8 months ago by Robert Castelo ★ 3.3k • written 8 months ago by Heba • 0

9 results • Page 1 of 1

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Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k

Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k

I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …

Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k

This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…

Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0

Thank you Tim, this is a great help in getting me started!

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Answer: limma Intercept vs No-intercept models completely changing DMR results?

Answer: CombineArrays for EPIC and EPIC V2

Answer: Too many significant genes when integrating gtex and tcga

Comment: Too many significant genes when integrating gtex and tcga

A: Print Differentially Expressed Exons From Dexseq Results

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