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guideseq
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2
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4
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1.5k
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GUIDESeq analysis - handling biological and technical replicates
guideseq
updated 6.7 years ago by
Julie Zhu
★ 4.3k • written 6.7 years ago by
aamir.mir
• 0
2
votes
1
reply
1.2k
views
createBarcodeFasta in GUIDEseq
GUIDEseq
updated 6.7 years ago by
Julie Zhu
★ 4.3k • written 6.7 years ago by
aamir.mir
• 0
0
votes
6
replies
1.0k
views
Option to override removal of duplicate reads - GUIDEseq
GUIDEseq
updated 21 months ago by
Julie Zhu
★ 4.3k • written 21 months ago by
sharvari gujja
▴ 40
0
votes
0
replies
978
views
Analyzing CIRCLE-seq data using GUIDEseq package
GUIDEseq
CIRCLE-seq
6.5 years ago
Julie Zhu
★ 4.3k
0
votes
4
replies
970
views
GUIDEseq Error using offTargetAnalysisOfPeakRegions
GUIDEseq
updated 4.4 years ago by
Julie Zhu
★ 4.3k • written 4.4 years ago by
tomas.rodriguez
▴ 10
0
votes
3
replies
952
views
GUIDEseq plus/minus strand inputs
GUIDEseq
updated 4.7 years ago by
Julie Zhu
★ 4.3k • written 4.7 years ago by
tomas.rodriguez
▴ 10
0
votes
2
replies
877
views
GUIDEseq Error in GAlignmentPairs
GAlignmentPairs
GUIDEseq
updated 4.7 years ago by
Julie Zhu
★ 4.3k • written 4.7 years ago by
tomas.rodriguez
▴ 10
0
votes
2
replies
853
views
getUniqueCleavageEvents() not working in GUIDEseq package
GUIDEseq
updated 3.2 years ago by
Julie Zhu
★ 4.3k • written 3.3 years ago by
Tiffany
• 0
1
vote
3
replies
825
views
GUIDEseq BED input error
GUIDEseq
4.4 years ago
tomas.rodriguez
▴ 10
0
votes
1
reply
676
views
GUIDEseq outputDir error
GUIDEseq
updated 4.7 years ago by
Julie Zhu
★ 4.3k • written 4.7 years ago by
tomas.rodriguez
▴ 10
3
votes
1
reply
649
views
Major on-target peak not appearing in GUIDEseq results
GUIDEseq
updated 3.2 years ago by
Julie Zhu
★ 4.3k • written 3.2 years ago by
David Kuo
• 0
0
votes
1
reply
639
views
GUIDEseq bam input
GUIDEseq
bam
updated 4.7 years ago by
Julie Zhu
★ 4.3k • written 4.7 years ago by
tomas.rodriguez
▴ 10
0
votes
1
reply
540
views
GUIDEseq - Error combining individual steps into the pipeline
GUIDEseq
updated 24 months ago by
Julie Zhu
★ 4.3k • written 24 months ago by
sharvari gujja
▴ 40
0
votes
0
replies
468
views
Question about input to binReads.sh in GUIDEseq
GUIDEseq
24 months ago
sharvari gujja
▴ 40
0
votes
0
replies
400
views
GUIDEseq: read count for each offtarget
GUIDEseq
24 months ago
sharvari gujja
▴ 40
0
votes
0
replies
345
views
GUIDEseq - filtering offtarget sites present in background controls
GUIDEseq
24 months ago
sharvari gujja
▴ 40
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Answer: How to save the DEXSeq results
by
Michael Love
41k
If you look at the output here: https://bioconductor.org/packages/release/bioc/vignettes/DEXSeq/inst/doc/DEXSeq.html#4_Testing_for_differe…
Answer: Method to find pathways different between 2 groups
by
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Hi, regarding how could you combine the result from each tool, one option is using a so-called "ensembl method", for instance, the package …
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As ATpoint already noted, you should proceed from the assumption that your audience knows nothing about what you are doing, and provide eno…
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41k
https://support.bioconductor.org/p/73432/#73448
Comment: Couldn't connect to server while using "pathways"
by
Michael Love
41k
You've put the tag "DESeq2" which results in an email to the maintainer, me, that I should respond to a post on the support site. Can you …
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Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: Method to find pathways different between 2 groups
Comment: Trying to use enrichGO
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Handling multiple differential expression comparisons
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