Bioconductor H5ls

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R h5ls windows linux

updated 7.8 years ago by Mike Smith ★ 6.6k • written 8.0 years ago by maxime.fortin • 0

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Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by James W. MacDonald 68k

It is not uncommon for library size to be apparent in an MDS plot. You can use `sva` or `RUV` to account for that.

Comment: p-adjusted values in multiple comparisons by Josh • 0

Yes, using lmFit with block and duplicateCorrelation is appropriate; mobile data collection can illustrate blocking importance. First estim…

Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by abaed • 0

Understood, thanks. The issue I'm seeing is that even after normalization, the MDSplot still orders samples by library size. I suspect cell…

Answer: Differential motif analysis by James W. MacDonald 68k

This site is meant to provide technical help for Bioconductor packages. Your questions would be more on-topic for biostars.org.

Comment: replace cat with message in glmTreat when lfc = 0 by ATpoint ★ 4.9k

> but there is no way to capture this type of printing when you're fully aware of what is happening and don't want to see the messages (e.g…

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