updated 3 months ago by
Danny Smith
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written 3 months ago by
Daniel E. Weeks
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Answer: limma with or without intercept gives different results
by
Gordon Smyth
47k
Subsetting the data will always change the results, as it would do for any linear model or anova analysis, not just for limma. We always re…
Comment: Question about filter by expression (filterByExpr) in edgeR
by
mohammedtoufiq91
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10
@gordonsmyth this is noted, thank you, I will write as you suggested.
Comment: Sudden error with KEGG analysis using gometh
by
pedro-marra
▴
10
Thank you very much! I installed two packages that R kept saying that needed to be installed, and now I am getting the same results as befo…
Comment: Question about filter by expression (filterByExpr) in edgeR
by
Gordon Smyth
47k
Your code is correct. Your code is equivalent to what I suggested, just somewhat longer and more complicated. Why not use the `group` argum…
Comment: Question about filter by expression (filterByExpr) in edgeR
by
mohammedtoufiq91
▴
10
@gordonsmyth thank you very much.
Then, I would just use like the below:
```
Treatment_Timepoint.filter <- factor(Sample.info$Treatment_T…
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