Showing : DataFrame • reset
11
votes
17
replies
2.8k
views
SV4Vectors DataFrame bug with haven_labelled data
S4Vectors DataFrame haven_labelled haven
updated 2.0 years ago by ▴ 20 • written 2.0 years ago by ▴ 30
1
vote
3
replies
1.6k
views
Extract specific portion of a string and paste to a new column in R
Rscript tidyr dataframe tidyverse offtopic
updated 2.3 years ago by 700 • written 2.4 years ago by • 0
1
vote
0
replies
2.3k
views
stuck on unimplemented type 'list' in 'EncodeElement'
list save dataframe
updated 2.5 years ago by 4.1k • written 2.5 years ago by ▴ 10
0
votes
1
reply
798
views
How to insert a qvalues column in a dataframe with pvalues in R
qvalues dataframe
updated 2.9 years ago by 52k • written 2.9 years ago by • 0
1
vote
4
replies
3.2k
views
DESeq2 swap ensembl gene id rownames with gene symbol column
deseq2 dataframe ensembl gene id gene symbol entrezid
5.0 years ago jason.williams ▴ 10
1
vote
1
reply
968
views
Checking if to DataFrames are identical
S4Vectors DataFrame
5.3 years ago maltethodberg ▴ 180
5
votes
2
replies
1.1k
views
DataFrame after splitting and back
DataFrame S4Vectors
updated 5.6 years ago by ★ 11k • written 5.6 years ago by 1.6k
2
votes
2
replies
1.2k
views
DataFrame compatible left_join (merge) operation supporting S4 complex columns that never reorders rows
s4 dataframe left_join merge
updated 5.6 years ago by 16k • written 5.6 years ago by ▴ 90
1
vote
5
replies
1.7k
views
DESeq2: differential expression analysis from matrix count with gene annotation
deseq2 dataframe pasilla
updated 5.6 years ago by 43k • written 5.6 years ago by ▴ 30
0
votes
2
replies
1.5k
views
DataFrame matrix subsetting
DataFrame subsetting S4Vectors
updated 5.9 years ago by 16k • written 5.9 years ago by • 0
1
vote
2
replies
1.4k
views
Split AME .tsv file into GRanges object or DataFrame
meme ame motif dataframe granges
updated 6.1 years ago by ★ 11k • written 6.1 years ago by ▴ 60
0
votes
5
replies
4.9k
views
Unable to find an inherited method for function distanceToNearest for signature GRanges
chipenrich granges distancetonearest function dataframe
7.1 years ago rbronste ▴ 60
6
votes
6
replies
6.6k
views
converting a GRangesList object with different lengths into a data frame
genomicranges grangeslist dataframe irangeslist lists
updated 7.2 years ago by ★ 11k • written 7.2 years ago by ★ 1.5k
0
votes
2
replies
1.4k
views
how to build gene.pathway data.frame for non-model organism
limma kegg topgo dataframe edger
7.3 years ago mictadlo ▴ 10
3
votes
2
replies
1.6k
views
matrix as a column of mcols of GRanges would not be extracted correctly by lapply
mcols DataFrame GRanges
updated 7.4 years ago by ★ 11k • written 7.4 years ago by ▴ 30
2
votes
4
replies
1.7k
views
Generic functions for DataFrames of Rle objects ?
DataFrame Rle generic expression table
updated 17 months ago by 16k • written 7.5 years ago by ▴ 180
4
votes
10
replies
2.5k
views
Printing DataFrame with nested DataFrames causes error
s4vectors dataframe
updated 7.8 years ago by 16k • written 7.8 years ago by ▴ 70
2
votes
2
replies
1.3k
views
How to conditionally combine IntegerList in the DataFrame more elegantly?
r iranges integerlist DataFrame
updated 8.1 years ago by ▴ 80 • written 8.1 years ago by • 0
2
votes
2
replies
1.3k
views
getting global Fisher score for overlap of 3 GRanges object by element-wise [solved]
r DataFrame fisher-method
8.4 years ago Jurat Shahidin ▴ 80
0
votes
0
replies
853
views
Error in TopologyGSA
topologyGSA dataframe
8.6 years ago saamar.rajput • 0
1
vote
1
reply
1.8k
views
Write the "map" DataFrame from genotypeToSnpMatrix() to a text file
variantannotation DataFrame snpstats
9.1 years ago TimothéeFlutre ▴ 80
21 results • Page 1 of 1
Recent ...
Replies
Comment: Running multiple KNN queries in parallel by SamGG ▴ 360
Thank you for your detailed answer, I appreciate it and your work.
Answer: Running multiple KNN queries in parallel by Aaron Lun ★ 28k
That is correct - you can't pass the prebuilt objects to different processes. Maybe `MulticoreParam()` might work on POSIX systems but I'm …
Answer: RSubread output significantly different from bash Subread output by Gordon Smyth 52k
The difference (as ATpoint has correctly pointed out) is that Rsubread::featureCounts counts multi-mapping reads by default whereas the com…
Answer: Deseq2 Error in solve.default(qr.R(qrx)) : 'a' (1 x 0) must be square by Michael Love 43k
I would check the rank of your model matrix, and perhaps meet with a local statistician who can help you create an appropriate design matri…
Comment: sva: get a sv for RIN scores by gabriel.hoffman ▴ 170
Agreed. I'll add that with small sample size, a covariate can explain some fraction of expression variation even under the null.
Votes
Answer: Running multiple KNN queries in parallel
Answer: Running multiple KNN queries in parallel
Answer: RSubread output significantly different from bash Subread output
Answer: RSubread output significantly different from bash Subread output
Answer: How to annotate a limma Elist raw class object with an annotation file
Awards • All
Scholar to Aaron Lun ★ 28k
Teacher to Michael Love 43k
Popular Question to Dario Strbenac ★ 1.5k
Scholar to ATpoint ★ 4.6k
Popular Question to Gordon Smyth 52k
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