Bioconductor Heatplot

Showing : heatplot • reset

0

votes

0

replies

765

views

enrichplot stringr heatplot

2.5 years ago ruba-mahmoud • 0

0

votes

5

replies

4.1k

views

heatplot enrichplot

updated 2.5 years ago by ruba-mahmoud • 0 • written 3.2 years ago by Melanie • 0

2

votes

1

reply

2.3k

views

clusterProfiler enrichplot heatplot

4.2 years ago fatimaruizdelabastida ▴ 10

0

votes

1

reply

1.4k

views

software error go dose heatplot gseGo

7.1 years ago aboumarshal • 0

4 results • Page 1 of 1

Recent ...

Replies

Comment: Can sample-level weights be used when analysing GSVA scores in limma? by Robert Castelo ★ 3.4k

Hi Gordon, thanks for giving your advice on how to use sample weights with GSVA scores. I have not used so far sample weights with GSVA sco…

Answer: Which preprocessing steps are needed before running limpa? by Gordon Smyth 53k

It looks to me that everything is working ok and limpa has done the right thing. You data has a lot of missing values, with the proportion …

Answer: Can sample-level weights be used when analysing GSVA scores in limma? by Gordon Smyth 53k

Yes, you could probably use the voom sample weights for an analysis of the GSVA scores for the same data, although I have never tried it. …

Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name by Erik Wright ▴ 160

You are correct. Thank you for noticing some of this 'pollution' with "_2" suffixes was unnecessary. I posted an updated SILVA classifier …

Comment: Which preprocessing steps are needed before running limpa? by miro165sabo • 0

Hi @gordonsmyth, thank you a lot for very fast and valuable response. I edited the question to provide more details.

Votes

A: The meaning of results produced by the bamQC function implemented in the ATACseq

The meaning of results produced by the bamQC function implemented in the ATACseqQC

A: Reference paper or resource for limma::diffSplice and edgeR::diffSpliceDGE metho

Answer: Which preprocessing steps are needed before running limpa?

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?

Awards • All

Popular Question to Robert Castelo ★ 3.4k