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Comment: edgeR - how to convert DGELRT and other classes to .csv files
by
Benjamin
•
0
Thank you Aaron. I am wondering if you know how to write the .csv file with both the topTags (statistical analysis) and the original counts…
Answer: error with: .make_splicings <- function(exons, cds, stop_codons=NULL)
by
James W. MacDonald
59k
That's a very old build, and an old version of the GFF standard. You would be better off getting something more recent.
```
> txdb <- m…
Answer: RPX PXDataset error
by
Sakimmd7
•
0
Hi Gianluigi,
I am doing the same course currently and stumbled upon the same issue. After trying out different things, I realised the …
Answer: CPM after RUVseq
by
James W. MacDonald
59k
The normalizedCounts aren't logCPM. They are, as advertised, normalizedCounts.
```
> example("RUVr")
<snip>
RUVr> head(normCounts(seq…
Comment: Merging two plated in R
by
James W. MacDonald
59k
Heh. I know how you feel. Can't tell you how many times I've sat here staring at some code thinking 'why does this not work!?!' I blame R, …
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