Bioconductor Htsfilter

Showing : htsfilter • reset

votes

replies

2.2k

views

DESeq2 HTSFilter

updated 4.9 years ago by andrea.rau ▴ 80 • written 4.9 years ago by Ian • 0

vote

1.3k

views

metarnaseq Jaccard index htsfilter

updated 8.3 years ago by andrea.rau ▴ 80 • written 8.3 years ago by ed_isfahani • 0

votes

1.4k

views

software error deseq metarnaseq HTSFilter columns

updated 8.3 years ago by Wolfgang Huber ★ 13k • written 8.3 years ago by ed_isfahani • 0

votes

replies

2.2k

views

htsfilter

updated 9.0 years ago by andrea.rau ▴ 80 • written 9.0 years ago by snamjoshi87 ▴ 40

votes

replies

1.8k

views

htsfilter parallel

updated 9.8 years ago by andrea.rau ▴ 80 • written 9.8 years ago by Richard Yanicky ▴ 10

votes

replies

4.6k

views

Normalization GO Network HTSFilter DESeq2 Normalization GO Network HTSFilter DESeq2

updated 12.0 years ago by Michael Love 43k • written 12.0 years ago by Guest User ★ 13k

6 results • Page 1 of 1

Recent ...

Replies

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

Votes

Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

Answer: Important: Bioconductor Release 3.22 Delayed

Awards • All