Bioconductor Idiogram

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idiogram idiogram

14.0 years ago Paul Shannon ★ 1.1k

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idiogram GenomeGraphs idiogram GenomeGraphs

updated 14.8 years ago by Kasper Daniel Hansen ★ 6.5k • written 14.8 years ago by Ramzi TEMANNI ▴ 160

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Annotation Cancer geneplotter idiogram rtracklayer Annotation Cancer geneplotter idiogram

15.4 years ago Martin Morgan 25k

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Organism idiogram Organism idiogram

15.9 years ago Dykema, Karl ▴ 90

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idiogram GenomeGraphs idiogram GenomeGraphs

updated 16.3 years ago by Oosting, J. PATH ▴ 550 • written 16.3 years ago by Michael Gormley ▴ 60

5 results • Page 1 of 1

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Answer: Which input data is acceptable for MAST? by Andrew_McDavid ▴ 270

Not too familiar with SCT v2. If it also has a point-mass at zero and the non-zero component is roughly-symmetric, then it might work ok w…

Answer: segfault when using singleR with Azimuth reference by James W. MacDonald 67k

The training step is usually faster than the classification step, so you might try running `trainSingleR` on the reference to see if that i…

Comment: Batch Effect in DESeq2, how to control, how to remove it, how to address biologi by James W. MacDonald 67k

You don't. I believe Fisher has a quote that applies here. Also, please don't add to five year old posts. Start a new one.

Comment: Convert HGVS Representation back to Reference Genome Coordinates by Vince Schulz ▴ 160

Not a bioconductor solution, and probably not easily code-able, but there is a batch validate/convert function available here: https://vari…

Answer: How to control batch effect if Group and batch are same? by ATpoint ★ 4.5k

You cannot do any correction. That's the simple and only answer. You cannot distinguish true biological effect from unwanted technical vari…

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Answer: How to control batch effect if Group and batch are same?

Comment: Convert HGVS Representation back to Reference Genome Coordinates

Answer: How to control batch effect if Group and batch are same?

Comment: Normalization RNA-seq for multiple plates

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Popular Question to Andrew_McDavid ▴ 270

Scholar to Ryan C. Thompson ★ 7.9k