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Tutorial: Reading csv file in minfi
minfi infinium 450K Tutorial
4.3 years ago lalchungnungabt17 • 0
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Comment: DeSEQ 2 Error: some values in assay are negative by James W. MacDonald 63k
In order to back up your assertion that there are no negative values, you should provide evidence. For example ``` any(countData < 0) dds …
Answer: DeSEQ 2 Error: some values in assay are negative by Michael Love 40k
You don't need to remove 0's. What do you get with ``` any(countData < 0) ``` (fixed, typo first time around)
Comment: Interpret plot from DiffBind by Rory Stark ★ 4.9k
See above, you want the sites where `Fold > 0`.
Comment: Interpret plot from DiffBind by Rory Stark ★ 4.9k
That does seem like you have a very high number of open chromatin sites changing. How many are in the consensus matrix? You can see how ma…
Comment: Interpret plot from DiffBind by Rory Stark ★ 4.9k
I can see the confusion here as one color is being used in two different ways. The dark blue/purple color is used for the bars on the left…
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Answer: Using PEER to identify hidden confounders in RNA-seq data (not working)
Answer: Using PEER to identify hidden confounders in RNA-seq data (not working)
Answer: P-value histogram of testLinearModel is not uniform
Answer: Interpret plot from DiffBind
C: Minimum number of samples per treatment/group for WGCNA analysis
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