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INSPEcT: How to get the RNA dynamics for steady-state with INSPEcT minus
INSPEcT
15 months ago
MK
• 0
1
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1
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585
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INSPEcT: Question about the total RNA measurements and units of expression
INSPEcT
updated 3.5 years ago by
ste.depo
▴ 10 • written 3.5 years ago by
MK
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0
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1
reply
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INSPEcT: ribosomal RNA removal before INSPEcT analysis?
INSPEcT
updated 3.5 years ago by
ste.depo
▴ 10 • written 3.5 years ago by
MK
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0
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INSPEcT: Error when trying to run modelRates()
INSPEcT
software error
6.2 years ago
kent.riemondy
▴ 20
4 results • Page
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Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
> I am just re-processing due to being uncertain about how they used the edgeR analysis to reach gene level edgeR devs published something…
Comment: Differences in differential analysis methods for RNA-Seq
by
james.zhang20
• 0
Thanks for the explanations, it has helped clarify some things. Unfortunately, I am working from an early access public dataset (https://do…
Answer: Deseq2 and Normalization of RNA sequencing data
by
ATpoint
★ 4.1k
There is no expectation of normality that is realistic in terms of expression level. Levels are widely different between genes, and counts …
Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…
Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
by
Yveto
• 0
Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…
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A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
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