Bioconductor Intercept

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design.matrix logFC intercept edgeR model.matrix

2.5 years ago JK Kim ▴ 20

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3.9k

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limma voom rnaseq model.matrix intercept

updated 5.0 years ago by Gordon Smyth 51k • written 5.0 years ago by atakanekiz ▴ 30

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limma intercept

6.1 years ago Nicolas Servant ▴ 260

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1.9k

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limma linear model intercept

updated 7.4 years ago by Aaron Lun ★ 28k • written 7.4 years ago by marconerdaum • 0

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1.3k

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limma voom intercept coefficient

updated 8.3 years ago by James W. MacDonald 67k • written 8.3 years ago by rubi ▴ 110

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Answer: bioconductor packages on bioconda by James W. MacDonald 67k

The bioconda people are responsible for bioconda, so you should ask them if/when they are going to update.

Answer: txdb.mmusculus.ucsc.mm10.knowngene issue on X chromosome by James W. MacDonald 67k

The default for `plotKaryotype` is to use hg19.

Comment: Is it possible to parallelise saveHDF5SummarizedExperiment by Stefano Mangiola ▴ 20

saveTileDBSummarizedExperiment would be awesome. I think we need performance for execution time and memory required to save.

Comment: Create Illmina bead summary data by Liu • 0

Hi! Yes, thank you! I completely agree. I am just curious about how these two files are processed with AVG_Gre and detection p-value. I am …

Answer: Epic v2 Annotation CpG_maf source? by James W. MacDonald 67k

Those all come from dbSNP by way of UCSC. [See here][1], particularly lines 114 and onward. Here is no MAF for a CpG. The MAF is for the…

Votes

Answer: bioconductor packages on bioconda

Appropriate use of the function treat of the limma package

Comment: Is it recommended to analyze different tissues together when using edgeR

Answer: Deseq2 res Function

Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification

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