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Showing :
intercept
•
reset
5
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6
replies
1.8k
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LogFC values in edgeR - w/wo intercept
design.matrix
logFC
intercept
edgeR
model.matrix
23 months ago
JK Kim
▴ 20
3
votes
6
replies
3.2k
views
Understanding voom behavior when model matrix is used with/without intercept for a continuous variable
limma
voom
rnaseq
model.matrix
intercept
updated 4.4 years ago by
Gordon Smyth
50k • written 4.4 years ago by
atakanekiz
▴ 30
1
vote
7
replies
2.9k
views
limma and intercept
limma
intercept
5.5 years ago
Nicolas Servant
▴ 260
5
votes
1
reply
1.7k
views
Intercept in design matrix
limma
linear model
intercept
updated 6.8 years ago by
Aaron Lun
★ 28k • written 6.8 years ago by
marconerdaum
• 0
3
votes
1
reply
1.1k
views
Interpretation of voom limma's intercept coefficient
limma
voom
intercept
coefficient
updated 7.8 years ago by
James W. MacDonald
65k • written 7.8 years ago by
rubi
▴ 110
5 results • Page
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Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
ATpoint
★ 4.0k
I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…
Answer: Improving the design matrices vignette in RNAseq123
by
Gordon Smyth
50k
Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
• 0
Thank you for your comment! I'll review my code from top to bottom.
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;
Votes
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
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