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design.matrix logFC intercept edgeR model.matrix

18 months ago JK Kim ▴ 20

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limma voom rnaseq model.matrix intercept

updated 4.0 years ago by Gordon Smyth 48k • written 4.0 years ago by atakanekiz ▴ 30

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limma intercept

5.1 years ago Nicolas Servant ▴ 260

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limma linear model intercept

updated 6.4 years ago by Aaron Lun ★ 28k • written 6.4 years ago by marconerdaum • 0

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limma voom intercept coefficient

updated 7.4 years ago by James W. MacDonald 64k • written 7.4 years ago by rubi ▴ 110

5 results • Page 1 of 1

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Answer: RNASeq time course analysis, missing time points for control by Gordon Smyth 48k

You could fit a spline trend with design matrix `treatment+spline`. Then it won't matter than the control and treatment times don't match u…

Comment: DESeq2 - groups with biological replicates from the same patient by Oscar • 0

Thanks James for your helpful response. This particular experimental set up is very common in iPSC studies, where multiple differentiations…

Comment: DESeq2 test for synergistic vs additive effects by Jay • 0

Why is TrtAB - TrtA - TrtB + Control "not really a thing"? i came to this forum answer when attempting to use EdgeR to answer a similar que…

Comment: NCBI protein conversion to CDNA and NCBI gene (in R) by Gordon Smyth 48k

Continuation of https://support.bioconductor.org/p/9155428/

Comment: Why is DMRcate not available for Bioconductor version 3.18? by Tim Peters ▴ 150

Thanks Daniel, Gordon and Lori for flagging this. DSS is only needed for the vignette so I'll remove that section, plus the dependency, som…

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Answer: Differential gene expression analysis

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