Bioconductor Iterators

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r iterators performance

updated 8.7 years ago by phil.chapman ▴ 150 • written 8.7 years ago by chrisclarkson100 ▴ 50

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r findoverlaps iterators

updated 9.2 years ago by Hervé Pagès 16k • written 9.2 years ago by Jurat Shahidin ▴ 80

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foreach iterators

9.2 years ago ben.ward ▴ 30

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dnastringset parallel iterators

9.3 years ago ben.ward ▴ 30

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Comment: single-cells RNA-seq analysis by MAST with unbalanced group size by achoppe ▴ 10

Hello! I also have compared uneven groups of cells - 517 cells in one group and 26 in the other. I am wondering if you know any published …

Comment: DESeq2 model - How to test case/control time course model when taking account wi by wuwenhui2 • 0

Thanks, I figured it out.

Comment: Design Matrix with paired and independent samples plus RUVg Spike-in normalizati by Mei • 0

I have a similar experiment with 7 paired samples (T0 and T1) in each of 4 outcome groups. I am using RUVr combined with limma-voom, so I a…

Comment: Help with the code for "BiocNeighbors::generic_find_knn() function used by scran by Arctic • 0

Many thanks for the link to the C++ code. I will see if I can find someone with C++ experience to help me with the code breakdown from her…

Answer: Help with the code for "BiocNeighbors::generic_find_knn() function used by scran by Aaron Lun ★ 28k

It's calling C++ code, see the relevant function definitions on [GitHub](https://github.com/knncolle/BiocNeighbors/blob/master/src/generics…

Votes

A: single-cells RNA-seq analysis by MAST with unbalanced group size

Comment: plyranges: find exact GRanges match keeping metadata columns

Answer: Help with the code for "BiocNeighbors::generic_find_knn() function used by scran

Is it possible to speed up VariantAnnotation's rowRanges function when converting to a dataframe?

Answer: Is it possible to speed up VariantAnnotation's rowRanges function when convertin

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