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dnastringset
•
reset
2
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1
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676
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DNAStringSet to DNAStringSetList according to pattern in sequence names
dnastringset
dnastringsetlist
seqnames
5.1 years ago
s.ghignone
▴ 10
3
votes
4
replies
3.4k
views
How to convert a DnaStringSet object to list of seq?
dnastringset
list
stringset
updated 6.4 years ago by
Martin Morgan
25k • written 6.4 years ago by
vinod.acear
▴ 50
2
votes
5
replies
4.0k
views
How to use subSeq with DNAStringSet and information of GroupedIRanges?
subseq
Xvector
dnastringset
updated 6.5 years ago by
Hervé Pagès
16k • written 6.5 years ago by
Sophie
• 0
0
votes
2
replies
745
views
how to deal with multiple barcodes/index in the analysis
dnastringset
aastringset
6.8 years ago
XIA.PAN
▴ 20
6
votes
6
replies
4.5k
views
how to extract part of the DNA sequences from a DNAstringset
DNAstringset
updated 6.8 years ago by
Hervé Pagès
16k • written 6.8 years ago by
XIA.PAN
▴ 20
3
votes
1
reply
5.0k
views
extract subsequence(s) from DNAStringSet with getSeq
dnastringset
getseq
updated 7.4 years ago by
Hervé Pagès
16k • written 7.4 years ago by
TimothéeFlutre
▴ 80
2
votes
3
replies
1.5k
views
visualing pwm motif on a DNAstring
pwmenrich
dnastringset
updated 7.7 years ago by
Robert Stojnic
▴ 50 • written 7.7 years ago by
sekawaiwai2006
▴ 20
0
votes
4
replies
1.3k
views
Using iterators and foreach with doMC, using DNAStringSets
dnastringset
parallel
iterators
8.0 years ago
ben.ward
▴ 30
0
votes
3
replies
983
views
I want to sample (random ) nucleic acids at middle 20 positions of DNAstring set
DNAStringSet
sample
updated 8.0 years ago by
Hervé Pagès
16k • written 8.0 years ago by
vinod.acear
▴ 50
15
votes
2
replies
16k
views
Extract sequence from DNAStringSet object
dnastringset
updated 8.0 years ago by
Martin Morgan
25k • written 8.0 years ago by
komal.rathi
▴ 110
3
votes
8
replies
1.5k
views
problem with @ranges@start in DNAStringSet
vcf
testthat
dnastringset
8.1 years ago
TimothéeFlutre
▴ 80
1
vote
5
replies
4.0k
views
Converting a DNAStringSetList to characters quickly
readVcf
DNAStringSet
DNAStringSetList
variantannotation
readvcf
8.6 years ago
dan.gatti
• 0
12 results • Page
1 of 1
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Comment: Problem making orgdb package for bacteria (Pseudomonas) using annotation hub and
by
Aastha Kapoor
• 0
After several attempts the code has worked. I connected to a faster internet connection. set the timeout (1000000) and run the command. I …
Comment: DESeq2 estimateSizeFactors iterate takes too long
by
Karthik
• 0
Hello, I agree with you, and we are in process of working with collaborators, but I wanted to get a general opinion on the data and get a …
Comment: It's possible to use clusterProfiler without an annotationDBI package
by
Guido Hooiveld
★ 3.8k
Code to show it works: > library(clusterProfiler) > > ## use provided 10 IDs, plus as last one add ID that has a GO annotati…
Comment: It's possible to use clusterProfiler without an annotationDBI package
by
Guido Hooiveld
★ 3.8k
You are almost there... Yet - pay attention to the error message (`--> No gene can be mapped.... --> Expected input gene ID: GO:0055080, .…
Comment: Problem loading HDF5Array in R 4.3.2
by
Sarah
• 0
Thanks for the reply! I tried this and it is crashing at `h5createFile("test.h5")` even after reinstalling **Rhdf5lib** and **rhdf5** It …
Votes
Answer: Limma/DESeq2 for unbalanced nested design (paired samples)
Result from GSEA for non-model organism not as expected
Comment: DESeq2 estimateSizeFactors iterate takes too long
Answer: DESeq2 estimateSizeFactors iterate takes too long
Comment: biomaRtl returns multiple GO terms when filtering on a single GO term in ensembl
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Mike Smith
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Hervé Pagès
16k
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bas_work
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James W. MacDonald
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