Bioconductor Kegggraph

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igraph KEGGgraph RCy3 GraphNEL

4 months ago • updated 3 months ago Arindam ▴ 80

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KEGGgraph KEGG

updated 8 months ago by Guido Hooiveld ★ 4.1k • written 8 months ago by Fara • 0

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KEGGgraph org.Cs.eg.db clusterProfiler KEGG AnnotationHubSoftware

updated 9 months ago by James W. MacDonald 67k • written 9 months ago by fernanda.backsouza ▴ 30

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KEGGREST GenomicDistributionsData KEGGgraph KEGG

updated 9 months ago by Guido Hooiveld ★ 4.1k • written 9 months ago by fernanda.backsouza ▴ 30

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enrichKEGG KEGGgraph KEGG

updated 11 months ago by Guido Hooiveld ★ 4.1k • written 11 months ago by cinzia.spagnoli • 0

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Answer: Curiously shaped volcano plot with using oarfish + swish to do differential gene by Michael Love 43k

See swish vignette, these are explained.

Comment: Problems with oarfish + tximport + swish by Michael Love 43k

Great thanks for posting the issue and sticking with it Annaleigh

Comment: Problems with oarfish + tximport + swish by brown.annaleigh • 0

Awesome possum! Update works!! Thank you so much for the help and guidance!

Comment: Postdoctoral Researcher in Spatial Gene Regulatory Networks underlying Stomatal by iqratechnology4 • 0

Iqra Technology is IT Solutions and Services Company. We are salesforce and Microsoft partner company. https://iqratechnology.com/

Comment: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt? by James W. MacDonald 67k

> BTW, shouldn't you be using keep.lib.sizes = F and re-do the calcNormFactors() after filtering of the dglst low-expression ENSGs, as Gord…

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Answer: Limma Interaction Effect with Covariates

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