Bioconductor Limma-trend

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limma limma-trend limma-voom

updated 10 months ago by floriandeckert ▴ 30 • written 2.0 years ago by hainct • 0

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limma limma-trend voom RNASeq

3.0 years ago • updated 2.9 years ago Tyler Sagendorf ▴ 10

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MNNCorrect scMerge limma-trend

updated 3.5 years ago by Gordon Smyth 51k • written 3.6 years ago by hainct • 0

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limma-trend limma

updated 6.3 years ago by Aaron Lun ★ 28k • written 6.3 years ago by Jenny G • 0

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limma voom limma-trend

updated 6.7 years ago by max.moldovan • 0 • written 7.8 years ago by b.nota ▴ 370

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954

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search tximport limma-trend

updated 6.8 years ago by James W. MacDonald 67k • written 6.8 years ago by Jenny Drnevich ★ 2.0k

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2.6k

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tximport limma limma-trend edgeR

updated 7.1 years ago by Aaron Lun ★ 28k • written 7.1 years ago by Jenny Drnevich ★ 2.0k

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limma-trend duplicatecorrelation arrayweights limma

updated 7.1 years ago by Gordon Smyth 51k • written 7.1 years ago by maltethodberg ▴ 180

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limma limma voom limma-trend

updated 7.9 years ago by Gordon Smyth 51k • written 7.9 years ago by Nik Tuzov ▴ 90

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limma voom limma-trend

updated 8.1 years ago by Gordon Smyth 51k • written 8.1 years ago by maltethodberg ▴ 180

10 results • Page 1 of 1

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Comment: ColData and ERROR: rows did not converge in beta, labelled in mcols(object)$beta by daniela.gutierrezandrade • 0

Hello, I am running into a similar issue. After setting the design, at the beginning of the analysis I filter rows with low counts. d…

Comment: Limma- Print-tip loess normalisation-printer layout information does not match M by dseauer • 0

Thank you so much for all of your help! I really appreciate it!

Comment: Limma- Print-tip loess normalisation-printer layout information does not match M by Gordon Smyth 51k

Thanks for extra info, but be careful that the Bioconductor support site requires code to be an markdown format. Copying code with prompts …

Comment: Limma- Print-tip loess normalisation-printer layout information does not match M by dseauer • 0

Thank you so much for your reply! I am sincerely sorry- of course I do not have multiple GAL files- just one- I meant gpr files! I am so so…

Comment: Is it possible to parallelise saveHDF5SummarizedExperiment by Stefano Mangiola ▴ 20

Thansk Herve', I will try. For reference this is the parallelization implementation of zellkonverter, to save anndata from SCE https://gi…

Votes

A: Recommendations for combining multiple 10x runs into one SingleCellExperiment

Answer: Handling biological replicates in DESeq2

Comment: biomaRt rnorvegicus_gene_ensembl not available anymore

biomaRt rnorvegicus_gene_ensembl not available anymore

A: Does edgeR need to specify reference group?

Awards • All

Commentator to James W. MacDonald 67k

Popular Question to Stefano Mangiola ▴ 20